cavemem

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\ngit push origin master","description":"Push master to origin"} output={"stdout":"To https://bitbucket.org/finaccelteam/beehive-kfi.git\n 2aa3577..6aa720e master -> master","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false,"gitOperation":{"push":{"branch":"master"}}}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\ngit status --porcelain --branch\ngit log --oneline -3","description":"Confirm current state of master before pushing"} output={"stdout":"## master...origin/master [ahead 22]\n?? \"Using Knowledge Graph in Software Development.md\"\n6aa720e Merge branch 'worktree-knowledge-graph-tooling'\n8f0db31 fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\n2c7cf93 fix(sre skill): inline query recipe instead of dangling _shared/agent-boilerplate.md reference","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

ExitWorktree input={"action":"remove","discard_changes":true} output={"action":"remove","originalCwd":"/home/etc/claude-code/work/beehive-kfi","worktreePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","worktreeBranch":"worktree-knowledge-graph-tooling","discardedFiles":0,"discardedCommits":19,"message":"Exited and removed worktree at /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling. Discarded 19 commits. Session is now back in /home/etc/claude-code/work/beehive-kfi."}

AskUserQuestion input={"questions":[{"question":" worktree's 19 commits are already fully merged into master (verified via git merge-base). ExitWorktree wants explicit confirmation before removing worktree/branch since it can't see that they're merged. Proceed with removal?","header":"Confirm cleanup","options":[{"label":"Yes, remove it (Recommended)","description":"All 19 commits already live on master — removing worktree and its branch loses nothing."},{"label":"No, keep it","description":"Leave work… output={"questions":[{"question":" worktree's 19 commits are already fully merged into master (verified via git merge-base). ExitWorktree wants explicit confirmation before removing worktree/branch since it can't see that they're merged. Proceed with removal?","header":"Confirm cleanup","options":[{"label":"Yes, remove it (Recommended)","description":"All 19 commits already live on master — removing worktree and its branch loses nothing."},{"label":"No, keep it","description":"Leave work…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit status --porcelain\ngit log --oneline -1\necho \"---confirm merged into master---\"\ngit -C /home/etc/claude-code/work/beehive-kfi merge-base --is-ancestor HEAD master && echo \"YES: fully merged into master\"","description":"Confirm worktree branch is fully merged and clean before removal"} output={"stdout":"8f0db31 fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\n---confirm merged into master---\nYES: fully merged into master","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

ToolSearch input={"query":"select:ExitWorktree","max_results":2} output={"matches":["ExitWorktree"],"query":"select:ExitWorktree","total_deferred_tools":71}

Bash input={"command":"GIT_DIR=$(cd \"$(git rev-parse --git-dir)\" 2>/dev/null && pwd -P)\nGIT_COMMON=$(cd \"$(git rev-parse --git-common-dir)\" 2>/dev/null && pwd -P)\nWORKTREE_PATH=$(git rev-parse --show-toplevel)\necho \"GIT_DIR=$GIT_DIR\"\necho \"GIT_COMMON=$GIT_COMMON\"\necho \"WORKTREE_PATH=$WORKTREE_PATH\"","description":"Check worktree path before cleanup decision"} output={"stdout":"GIT_DIR=/home/etc/claude-code/work/beehive-kfi/.git/worktrees/knowledge-graph-tooling\nGIT_COMMON=/home/etc/claude-code/work/beehive-kfi/.git\nWORKTREE_PATH=/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/diff -rq /home/etc/claude-code/work/beehive-kfi/claude-agents/ ~/.claude/agents/ --exclude='.git'\necho \"(empty = in sync)\"","description":"Confirm ~/.claude/agents/ still matches merged master content"} output={"stdout":"(empty = in sync)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\npython3 scripts/check_agent_refs.py\necho \"exit: $?\"\ngit status --porcelain","description":"Verify regression check passes on merged master"} output={"stdout":". distribution — copy sites ship subdirectories\n PASS\nB. reference — agents name path that resolves at runtime\n PASS\n\nPASS — both invariants hold\nexit: 0\n??.claude/worktrees/\n?? \"Using Knowledge Graph in Software Development.md\"","stderr":"\nShell cwd was reset to /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\ngit checkout master\ngit merge worktree-knowledge-graph-tooling --no-edit\necho \"exit: $?\"\ngit log --oneline -5","description":"Merge worktree branch into master"} output={"stdout":"Already on 'master'\nYour branch is ahead of 'origin/master' by 2 commits.\n (use \"git push\" to publish your local commits)\nMerge made by 'ort' strategy.\n.claude/skills/knowledge-graph/SKILL.md | 67 ++++++++++++++++----\n.../orchestrator/references/phase-0-discovery.md | 2 +-\n.claude/skills/sre/SKILL.md | 22 ++++++-\n.claude/skills/swe/SKILL.md | 39 +++++++++++-\n CLAUDE.md …

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\ngit status --porcelain --branch\necho \"---fetch check (read-only)---\"\ngit fetch origin master --dry-run 2>&1 | head -20","description":"Check main checkout state and whether origin/master has moved before merging"} output={"stdout":"## master...origin/master [ahead 2]\n??.claude/worktrees/\n?? \"Using Knowledge Graph in Software Development.md\"\n---fetch check (read-only)---\nFrom https://bitbucket.org/finaccelteam/beehive-kfi\n * branch master -> FETCH_HEAD","stderr":"\nShell cwd was reset to /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","interrupted":false,"isImage":false,"noOutputExpected":false}

AskUserQuestion input={"questions":[{"question":"Implementation complete (19 commits, all task-reviewed and whole-branch reviewed — Ready to merge: Yes). What would you like to do?","header":"Finish branch","options":[{"label":"Merge back to master locally","description":"Merge worktree-knowledge-graph-tooling into master in main checkout, verify regression check on merged result, then clean up worktree and delete branch."},{"label":"Push and create Pull Request","description":"Push branch t… output={"questions":[{"question":"Implementation complete (19 commits, all task-reviewed and whole-branch reviewed — Ready to merge: Yes). What would you like to do?","header":"Finish branch","options":[{"label":"Merge back to master locally","description":"Merge worktree-knowledge-graph-tooling into master in main checkout, verify regression check on merged result, then clean up worktree and delete branch."},{"label":"Push and create Pull Request","description":"Push branch t…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nGIT_DIR=$(cd \"$(git rev-parse --git-dir)\" 2>/dev/null && pwd -P)\nGIT_COMMON=$(cd \"$(git rev-parse --git-common-dir)\" 2>/dev/null && pwd -P)\necho \"GIT_DIR=$GIT_DIR\"\necho \"GIT_COMMON=$GIT_COMMON\"\necho \"branch=$(git branch --show-current)\"\ngit merge-base HEAD master","description":"Detect environment for finishing-a-development-branch"} output={"stdout":"GIT_DIR=/home/etc/claude-code/work/beehive-kfi/.git/worktrees/knowledge-graph-tooling\nGIT_COMMON=/home/etc/claude-code/work/beehive-kfi/.git\nbranch=worktree-knowledge-graph-tooling\n2aa3577f3de3da1726d3f457573eb08add429eba","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\npython3 scripts/check_agent_refs.py\necho \"exit: $?\"\necho \"---git status---\"\ngit status --porcelain","description":"Run repository's regression check as test-verification gate"} output={"stdout":". distribution — copy sites ship subdirectories\n PASS\nB. reference — agents name path that resolves at runtime\n PASS\n\nPASS — both invariants hold\nexit: 0\n---git status---","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Skill input={"skill":"superpowers:finishing-a-development-branch"} output={"success":true,"commandName":"superpowers:finishing-a-development-branch"}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nFinal whole-branch review: complete (range 2aa3577..8f0db31, 19 commits). One Important finding (dangling _shared/agent-boilerplate.md reference on skill surface, sre+swe SKILL.md) fixed in commits 2c7cf93/8f0db31. Re-review: Ready to merge = Yes.\nEOF\ncd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit log --oneline 2aa35… output={"stdout":"19","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Re-review whole branch after fix","prompt":"This is re-review after fix. In prior whole-branch review of this same range, you ( different reviewer instance) found one Important issue:\n\n`.claude/skills/sre/SKILL.md` and `.claude/skills/swe/SKILL.md` both referenced \"`_shared/agent-boilerplate.md`\" for query recipes ( reverse-BFS blast-radius recipe and file-lookup recipe), but `.claude/skills/` has no `_shared/` directory and no path-resolution mechanism for it —… output={"status":"completed","prompt":"This is re-review after fix. In prior whole-branch review of this same range, you ( different reviewer instance) found one Important issue:\n\n`.claude/skills/sre/SKILL.md` and `.claude/skills/swe/SKILL.md` both referenced \"`_shared/agent-boilerplate.md`\" for query recipes ( reverse-BFS blast-radius recipe and file-lookup recipe), but `.claude/skills/` has no `_shared/` directory and no path-resolution mechanism for it — dangling reference that w…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== fence count sre ===\" && grep -c '```'.claude/skills/sre/SKILL.md\necho \"=== fence count swe ===\" && grep -c '```'.claude/skills/swe/SKILL.md\necho \"=== py syntax: sre recipe () ===\"\npython3 - <<'EOF'\nimport yaml\ng = yaml.safe_load(open('/dev/null')) or {'files':[]}\ntarget = 'src/services/bot_service.py'\nfor f in g['files']:\n if f['path'] == target:\n print(yaml.dump… output={"stdout":"=== fence count sre ===\n8\n=== fence count swe ===\n8\n=== py syntax: sre recipe () ===\nNOT FOUND\n=== py syntax: swe recipe (b) ===\nhop 1:.py:x [WARN verify by grep]","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"echo \"############ 8f0db31 (swe skill) ############\" && git show 8f0db31 --.claude/skills/swe/SKILL.md"} output={"stdout":"############ 8f0db31 (swe skill) ############\ncommit 8f0db313b4585473e56f384cff1aa3111a1e452d\nAuthor: khaerulumam42 <khaerulumam42@gmail.com>\nDate: Thu Jul 16 09:33:58 2026 +0000\n\n fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\n\ndiff --git/.claude/skills/swe/SKILL.md b/.claude/skills/swe/SKILL.md\nindex 4ebaebb..9165073 100644\n---/.claude/skills/swe/SKILL.md\n+++ b/.claude/skills/swe/SKILL.md\n@@ -27,11 +27,40…

Bash input={"command":"echo \"############ 2c7cf93 (sre skill) ############\" && git show 2c7cf93 --.claude/skills/sre/SKILL.md"} output={"stdout":"############ 2c7cf93 (sre skill) ############\ncommit 2c7cf9333a29230fa114c865d28f210deee33cbe\nAuthor: khaerulumam42 <khaerulumam42@gmail.com>\nDate: Thu Jul 16 09:33:51 2026 +0000\n\n fix(sre skill): inline query recipe instead of dangling _shared/agent-boilerplate.md reference\n\ndiff --git/.claude/skills/sre/SKILL.md b/.claude/skills/sre/SKILL.md\nindex a12dce6..39943de 100644\n---/.claude/skills/sre/SKILL.md\n+++ b/.claude/skills/sre/SKILL.md\n@@ -40,7 +40,21 @@ If `know…

Bash input={"command":"echo \"=== grep agent-boilerplate in.claude/skills ===\" && grep -rn \"agent-boilerplate\".claude/skills/ || echo \"NONE FOUND\""} output={"stdout":"=== grep agent-boilerplate in.claude/skills ===\nNONE FOUND","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"echo \"=== files touched by 2c7cf93 ===\" && git show --stat --oneline 2c7cf93 | head -20 && echo \"=== files touched by 8f0db31 ===\" && git show --stat --oneline 8f0db31 | head -20"} output={"stdout":"=== files touched by 2c7cf93 ===\n2c7cf93 fix(sre skill): inline query recipe instead of dangling _shared/agent-boilerplate.md reference\n.claude/skills/sre/SKILL.md | 16 +++++++++++++++-\n 1 file changed, 15 insertions(+), 1 deletion(-)\n=== files touched by 8f0db31 ===\n8f0db31 fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\n.claude/skills/swe/SKILL.md | 33 +++++++++++++++++++++++++++++++--\n 1 file changed, 31 insertions(…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","content":"# Shared agent boilerplate\n\nRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n\nThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (pro…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..8f0db31.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..8f0db31.diff","content":"# Review package: 2aa3577..HEAD\n\n## Commits\n8f0db31 fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\n2c7cf93 fix(sre skill): inline query recipe instead of dangling _shared/agent-boilerplate.md reference\n6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, h…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 2aa3577 HEAD","description":"Generate updated whole-branch review package including fix commits"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..8f0db31.diff: 19 commit(s), 158071 bytes","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\n/usr/bin/grep -n \"_shared/agent-boilerplate\".claude/skills/sre/SKILL.md.claude/skills/swe/SKILL.md\necho \"(empty above = fixed)\"\ngit log --oneline -4\ngit status --porcelain","description":"Independently verify dangling-reference fix and worktree state"} output={"stdout":"(empty above = fixed)\n8f0db31 fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\n2c7cf93 fix(sre skill): inline query recipe instead of dangling _shared/agent-boilerplate.md reference\n6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent","stderr":"","interrupted":false,"isImage":false,"noOu…

Agent input={"description":"Fix final review finding: dangling skill reference","prompt":"Work from /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling — cd there first, confirm with `git rev-parse --show-toplevel` (must print that exact path) and `git branch --show-current` (must print `worktree-knowledge-graph-tooling`) before editing. Do not touch main checkout at /home/etc/claude-code/work/beehive-kfi. Use Edit tool only — do not use sed ( earlier task in this sess… output={"status":"completed","prompt":"Work from /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling — cd there first, confirm with `git rev-parse --show-toplevel` (must print that exact path) and `git branch --show-current` (must print `worktree-knowledge-graph-tooling`) before editing. Do not touch main checkout at /home/etc/claude-code/work/beehive-kfi. Use Edit tool only — do not use sed ( earlier task in this session used sed and accidentally deleted unrelate…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current"} output={"stdout":"worktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit add.claude/skills/swe/SKILL.md && git commit -m \"fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\""} output={"stdout":"[worktree-knowledge-graph-tooling 8f0db31] fix(swe skill): inline blast-radius BFS recipe instead of dangling _shared/agent-boilerplate.md reference\n 1 file changed, 31 insertions(+), 2 deletions(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false,"gitOperation":{"commit":{"sha":"8f0db31","kind":"committed"}}}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit add.claude/skills/sre/SKILL.md && git commit -m \"fix(sre skill): inline query recipe instead of dangling _shared/agent-boilerplate.md reference\""} output={"stdout":"[worktree-knowledge-graph-tooling 2c7cf93] fix(sre skill): inline query recipe instead of dangling _shared/agent-boilerplate.md reference\n 1 file changed, 15 insertions(+), 1 deletion(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false,"gitOperation":{"commit":{"sha":"2c7cf93","kind":"committed"}}}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit diff --stat\necho \"---\"\ngit diff"} output={"stdout":".claude/skills/sre/SKILL.md | 16 +++++++++++++++-\n.claude/skills/swe/SKILL.md | 33 +++++++++++++++++++++++++++++++--\n 2 files changed, 46 insertions(+), 3 deletions(-)\n---\ndiff --git/.claude/skills/sre/SKILL.md b/.claude/skills/sre/SKILL.md\nindex a12dce6..39943de 100644\n---/.claude/skills/sre/SKILL.md\n+++ b/.claude/skills/sre/SKILL.md\n@@ -40,7 +40,21 @@ If `knowledge-graph.index.yaml` exists at repository root, `Read` it first — alw\n \n **Let `hubs` order your audit depth…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\npython3 -c \"\nimport ast\ncode1 = '''\nimport yaml\ng = yaml.safe_load(open(\\\"ROOT/knowledge-graph.yaml\\\"))\ntarget = \\\"src/services/bot_service.py\\\"\nfor f in g[\\\"files\\\"]:\n if f[\\\"path\\\"] == target:\n print(yaml.dump(f, sort_keys=False))\n break\nelse:\n print(\\\"NOT FOUND\\\")\n'''\nast.parse(code1)\nprint('sre block OK')\n\ncode2 = '''\nimport yaml\ng = yaml… output={"stdout":"sre block OK\nswe block OK","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","offset":37,"limit":20} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","offset":26,"limit":38} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — small, cheap, always worth it. It's query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.\n\n**Run blast-radius query before you change any signature.** single-hop `c…

Bash input={"command":"/usr/bin/grep -n \"_shared/agent-boilerplate\".claude/skills/sre/SKILL.md.claude/skills/swe/SKILL.md; echo \"grep exit: $?\""} output={"stdout":"grep exit: 1","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","old_string":"**Do not `Read` full `knowledge-graph.yaml`.** For anything beyond blast-radius query, use `Grep` or other query recipes in `_shared/agent-boilerplate.md`.","new_string":"**Do not `Read` full `knowledge-graph.yaml`.** For anything beyond blast-radius query, use `Grep` for anchor, or similar targeted `python3`/`yaml.safe_load` lookup —… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","oldString":"**Do not `Read` full `knowledge-graph.yaml`.** For anything beyond blast-radius query, use `Grep` or other query recipes in `_shared/agent-boilerplate.md`.","newString":"**Do not `Read` full `knowledge-graph.yaml`.** For anything beyond blast-radius query, use `Grep` for anchor, or similar targeted `python3`/`yaml.safe_load` lookup — ne…

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","old_string":"**Run blast-radius query before you change any signature.** single-hop `called_by` check misses caller-of-a-caller. Use reverse-BFS recipe in `_shared/agent-boilerplate.md`: it walks `called_by` transitively from your target symbol to full closure (no depth cap) and prints every affected symbol grouped by hop, not whole graph. Every hop-1..N ca… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","oldString":"**Run blast-radius query before you change any signature.** single-hop `called_by` check misses caller-of-a-caller. Use reverse-BFS recipe in `_shared/agent-boilerplate.md`: it walks `called_by` transitively from your target symbol to full closure (no depth cap) and prints every affected symbol grouped by hop, not whole graph. Every hop-1..N call…

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","old_string":"**Do not `Read` full `knowledge-graph.yaml`.** It can run to thousands of lines. When you need detail on specific file or symbol, use `Grep` for anchor, or query recipe from `_shared/agent-boilerplate.md` ( `Bash`/`python3` one-liner that loads graph and prints only matched node).","new_string":"**Do not `Read` full `knowledge-graph.ya… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","oldString":"**Do not `Read` the full `knowledge-graph.yaml`.** It can run to thousands of lines. When you need detail on a specific file or symbol, use `Grep` for the anchor, or a query recipe from `_shared/agent-boilerplate.md` (a `Bash`/`python3` one-liner that loads the graph and prints only the matched node).","newString":"**Do not `Read` the full `knowledge-graph.yaml`…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","offset":20,"limit":20} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","content":"1. Read all files in `docs/sre/` — fully understand requirements and architecture\n2. Generate or update engineering plan in `docs/swe/` (module breakdown, API contracts, data models)\n3. Study 3–5 existing files in area you're changing to match patterns\n4. Implement aligned with SRE recommendations, in risk order\n5. Update `documentation/sw…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","offset":35,"limit":15} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","content":"**Open with assumptions.** Begin `audit-findings.md` with **Assumptions & Open Questions** section. Any question touching scope (sync vs async, in-request vs consumer, which service owns flow) is flagged `SCOPE:` and surfaced — never silent guess.\n\n## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository roo…

Bash input={"command":"grep -n \"_shared/agent-boilerplate\" \"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md\" \"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md\""} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md:43:**Do not `Read` full `knowledge-graph.yaml`.** It can run to thousands of lines. When you need detail on specific file or symbol, use `Grep` for anchor, or query recipe from `_shared/agent-boilerplate.md` ( `Bash`/`python3` one-liner that loads graph and prints only matched node).\n/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-…

Bash input={"command":"cat -n \"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md\""} output={"stdout":" 1\t# Shared agent boilerplate\n 2\t\n 3\tRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n 4\t\n 5\tThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (project scope). Each agent locates it by probing those paths in turn, because agent's cwd at runtime is *target* rep…

Bash input={"command":"git rev-parse --show-toplevel && git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Final whole-branch review","prompt":"You are Senior Code Reviewer with expertise in prompt-engineering system design (this codebase is markdown-based subagent/skill definitions for Claude Code, not application code). Your job is to review completed work against its plan/spec and identify issues before they cascade — this is final whole-branch review after 13 individually-reviewed tasks.\n\n## What Was Implemented\n\nA repository (`beehive-kfi`) defines Claude Code subagents and s… output={"status":"completed","prompt":"You are Senior Code Reviewer with expertise in prompt-engineering system design (this codebase is markdown-based subagent/skill definitions for Claude Code, not application code). Your job is to review completed work against its plan/spec and identify issues before they cascade — this is final whole-branch review after 13 individually-reviewed tasks.\n\n## What Was Implemented\n\nA repository (`beehive-kfi`) defines Claude Code subagents and skills as markdown pro…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== any lingering 'Read... knowledge-graph.yaml... before' (old full-read instruction)? ===\"\ngrep -rn \"Read.*knowledge-graph.yaml\" claude-agents/.claude/skills/ | grep -iv \"do not\\|don't\\|never\\|index.yaml\"\necho \"--- (empty above = clean) ---\"\necho \"\"\necho \"=== confirm out-of-scope agents untouched in range ===\"\ngit diff --name-only 2aa3577 6ef2c5d | grep -Ei \"reviewer|b… output={"stdout":"=== any lingering 'Read... knowledge-graph.yaml... before' (old full-read instruction)? ===\nclaude-agents/knowledge-graph-agent.md:103:1. `Read` `$ROOT/knowledge-graph.yaml` — baseline. Note its `commit_hash` as `$BASE`.\n.claude/skills/knowledge-graph/SKILL.md:94:1. `Read` `$ROOT/knowledge-graph.yaml` — baseline. Note its `commit_hash` as `$BASE`.\n--- (empty above = clean) ---\n\n=== confirm out-of-scope agents untouched in range ===\n none of reviewer/builder/improver/b…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== plan handling of skill recipe references / _shared in skills ===\"\ngrep -n \"_shared\\|agent-boilerplate\\|skill\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md | grep -i \"skill\\|shared\\|boilerplate\" | head -30"} output={"stdout":"=== plan handling of skill recipe references / _shared in skills ===\n7:**Architecture:** This is prompt-engineering change to markdown agent/skill definitions, not application code — there is no compiler and no pytest suite to run. \"Tests\" in this plan are therefore: () `grep` checks that new required content landed in each file, (b) `python3 -c \"import yaml; yaml.safe_load(...)\"` checks that every YAML sample embedded in prompt parses (these samples are literal pat…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== did sre/swe SKILL.md reference agent-boilerplate BEFORE this branch (base 2aa3577)? ===\"\ngit show 2aa3577:.claude/skills/sre/SKILL.md 2>/dev/null | grep -n \"agent-boilerplate\\|_shared\" || echo \" sre SKILL: NO prior reference\"\ngit show 2aa3577:.claude/skills/swe/SKILL.md 2>/dev/null | grep -n \"agent-boilerplate\\|_shared\" || echo \" swe SKILL: NO prior reference\"\necho \"\"\nec… output={"stdout":"=== did sre/swe SKILL.md reference agent-boilerplate BEFORE this branch (base 2aa3577)? ===\n sre SKILL: NO prior reference\n swe SKILL: NO prior reference\n\n=== do skills reference _shared for anything else at all today? ===\n\n=== how do skills locate shared/template siblings normally? (probe pattern) ===","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== skill references to agent-boilerplate / _shared / recipes ===\"\ngrep -rn \"agent-boilerplate\\|_shared\\|query recipe\\|reverse-BFS\\|blast-radius\".claude/skills/sre/SKILL.md.claude/skills/swe/SKILL.md\necho \"\"\necho \"=== does skills tree ship agent-boilerplate or recipes anywhere? ===\"\nfind.claude/skills -name \"*.md\" | xargs grep -ln \"query recipe\\|blast-radius BFS\\|rev… output={"stdout":"=== skill references to agent-boilerplate / _shared / recipes ===\n.claude/skills/sre/SKILL.md:43:**Do not `Read` full `knowledge-graph.yaml`.** It can run to thousands of lines. When you need detail on specific file or symbol, use `Grep` for anchor, or query recipe from `_shared/agent-boilerplate.md` ( `Bash`/`python3` one-liner that loads graph and prints only matched node).\n.claude/skills/swe/SKILL.md:30:**Run blast-radius query before you change any signa…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== recipe c, unescaped as bash would deliver it ===\"\npython3 - <<'EOF'\nimport ast\ncode = '''\nimport yaml\ng = yaml.safe_load(open('/tmp/x/knowledge-graph.index.yaml'))\nfor h in g.get('hubs', []):\n if h['fan_in'] >= 5:\n print(f\"{h['file']}:{h['function']} fan_in={h['fan_in']} fan_out={h['fan_out']}\")\n'''\nast.parse(code)\nprint(\"recipe c compiles OK once shell-unescaped\… output={"stdout":"=== recipe c, unescaped as bash would deliver it ===\nrecipe c compiles OK once shell-unescaped\n\n=== end-to-end: build tiny graph, run recipe b (BFS) against it ===\nhop 1: src/repo/users.py:query_users\nhop 2: src/api/routes.py:list_endpoint [WARN verify by grep]","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== validate all embedded YAML samples (calls/hubs) ===\"\npython3 - <<'EOF'\nimport yaml\nsamples = [\n\"\"\"\ncalls:\n - target: insert_event_row\n file: bq_client.py\n resolution: import_map\n confidence: 0.95\n\"\"\",\n\"\"\"\nhubs:\n - file: database.py\n function: get_conn\n fan_in: 14\n fan_out: 1\n rank: 1\n\"\"\",\n]\nfor s in samples:\n yaml.safe_load(s)\nprint(\"… output={"stdout":"=== validate all embedded YAML samples (calls/hubs) ===\nall YAML samples parse OK\n\n=== syntax-check three python recipes in agent-boilerplate.md ===\nfound 3 python recipe blocks\nrecipe 0: compiles OK\nrecipe 1: compiles OK\nrecipe 2: SYNTAX ERROR unexpected character after line continuation character (<unknown>, line 5)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"echo \"=== sre skill around §8 audit heading fix (commit 8cda747) ===\" && grep -n \"8 Audit Areas\\|### 1. Database\\|Inspect all schema\".claude/skills/sre/SKILL.md && echo \"\" && echo \"=== check_agent_refs.py ===\" && python3 scripts/check_agent_refs.py 2>&1 | tail -20"} output={"stdout":"=== sre skill around §8 audit heading fix (commit 8cda747) ===\n53:## 8 Audit Areas\n55:### 1. Database\n57:Inspect all schema definitions (migrations, models, SQL). **This table is fleet-wide schema standard — swe skill implements against it:**\n\n=== check_agent_refs.py ===\nA. distribution — copy sites ship subdirectories\n PASS\nB. reference — agents name path that resolves at runtime\n PASS\n\nPASS — both invariants hold","stderr":"","interrupted":false,"isI…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/orchestrator-agent.md","offset":21,"limit":16} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/orchestrator-agent.md","content":"## Cardinal Rule\n\nYou have no Edit/Bash tools. only file you write is `docs/orchestrator/run-summary.md` (plus `_heartbeat.json` / `_resume-state.json` state files). You read **only** gate files: `docs/sre/business-flow-feature.md`, `docs/sre/audit-findings.md`, `docs/sre/business-flow.md`, `docs/sre/tickets-to-raise.md`, `d…

Bash input={"command":"echo \"=== index.yaml references ===\" && grep -rln \"knowledge-graph.index.yaml\" claude-agents/.claude/skills/ CLAUDE.md && echo \"\" && echo \"=== Cardinal Rule / Read graph in orchestrator ===\" && grep -n \"Read\\|Cardinal\\|graph\" claude-agents/orchestrator-agent.md | head -40"} output={"stdout":"=== index.yaml references ===\nclaude-agents/sre-agent.md\nclaude-agents/swe-agent.md\nclaude-agents/knowledge-graph-agent.md\nclaude-agents/_shared/agent-boilerplate.md\n.claude/skills/knowledge-graph/SKILL.md\n.claude/skills/sre/SKILL.md\nCLAUDE.md\nclaude-agents/README.md\nclaude-agents/debugger-agent.md\n.claude/skills/swe/SKILL.md\n.claude/skills/orchestrator/references/phase-0-discovery.md\nclaude-agents/orchestrator-agent.md\n\n=== Cardinal Rule / Read graph in orchestrator ===…

Bash input={"command":"echo \"=== 0.85 threshold mentions ===\" && grep -rn \"0\\.85\" claude-agents/.claude/skills/ CLAUDE.md && echo \"\" && echo \"=== 0.55 suffix_match mentions ===\" && grep -rn \"0\\.55\\|suffix_match\" claude-agents/.claude/skills/ CLAUDE.md"} output={"stdout":"=== 0.85 threshold mentions ===\nclaude-agents/debugger-agent.md:41:**Confidence gates trace.** Hops query flags `[WARN verify by grep]` (confidence < 0.85) are leads, not confirmed path — `Grep`-confirm before citing them as part of your root-cause chain in §3.\n.claude/skills/swe/SKILL.md:32:**Confidence gates trust, not action.** Edges query flags `[WARN verify by grep]` (confidence < 0.85) are leads, not facts: `Grep`-confirm before ruling caller in or out.\nclaude-a…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..6ef2c5d.diff","offset":687,"limit":400} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..6ef2c5d.diff","content":" Run every item before final message; report any failure than shipping broken graph.\n \n - [ ] `commit_hash` captured and equals `git rev-parse HEAD`\n - [ ] Existing-graph hash compared; mode chosen per startup table\n - [ ] YAML parses via `yaml.safe_load`\n - [ ] Every `files[].path` exists on disk and i…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/kredivo-docs/specs/2026-07-16-knowledge-graph-tooling-design.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/kredivo-docs/specs/2026-07-16-knowledge-graph-tooling-design.md","content":"# Knowledge graph as token/accuracy tool — design\n\n**Date:** 2026-07-16\n**Status:** Approved, pending implementation\n**Affects:** `knowledge-graph-agent`, `orchestrator-agent`, `sre-agent`, `swe-agent`, `debugger-agent`, `_shared/agent-boilerplate.md`, and their skill surfaces\n**Builds on:** `kredivo…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..6ef2c5d.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..6ef2c5d.diff","content":"# Review package: 2aa3577..HEAD\n\n## Commits\n6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-…

Read input={"file_path":"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/requesting-code-review/code-reviewer.md"} output={"type":"text","file":{"filePath":"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/requesting-code-review/code-reviewer.md","content":"# Code Reviewer Prompt Template\n\nUse this template when dispatching code reviewer subagent.\n\n**Purpose:** Review completed work against requirements and code quality standards before it cascades into more work.\n\n```\nSubagent (general-purpose):\n description: \"Review code changes\"\n prompt: |\n You are Senior Code Rev…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 2aa3577 HEAD","description":"Generate whole-branch review package"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-2aa3577..6ef2c5d.diff: 17 commit(s), 156726 bytes","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit merge-base master HEAD\ngit log --oneline master..HEAD | tail -20\necho \"---total commit count on this branch beyond master---\"\ngit rev-list --count master..HEAD","description":"Determine merge base and full commit list for whole-branch review"} output={"stdout":"2aa3577f3de3da1726d3f457573eb08add429eba\n6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule preserved)\na4aecf2 feat(debugger-agent): bidi…

TaskUpdate input={"taskId":"13","status":"completed"} output={"success":true,"taskId":"13","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 13: complete (verification-only, no commit). All 7 steps pass on re-verification with explicit /usr/bin/diff and /usr/bin/grep (bypassing RTK PreToolUse hook, since discovered during this task to silently fake \"identical\" diff output — hook has been removed from ~/.claude/settings.json with user approval). Two of plan's own Step 2/Step 4 command… output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== Step 3 re-verify (index-file mention in every consumer) via /usr/bin/grep ===\"\n/usr/bin/grep -L \"knowledge-graph.index.yaml\" claude-agents/sre-agent.md claude-agents/swe-agent.md claude-agents/debugger-agent.md.claude/skills/sre/SKILL.md.claude/skills/swe/SKILL.md\necho \"(empty above = all 5 files mention it = PASS)\"\necho \"\"\necho \"=== Step 5 re-verify: FULL recursive sync diff… output={"stdout":"=== Step 3 re-verify (index-file mention in every consumer) via /usr/bin/grep ===\n(empty above = all 5 files mention it = PASS)\n\n=== Step 5 re-verify: FULL recursive sync diff via /usr/bin/diff ===\n(empty above = fully in sync = PASS)\n\n=== whoami/env probe: is rtk still active in this shell? ===\ndiff is /usr/bin/diff\ngrep is function\ngrep () \n{ \n local _cc_a;\n for _cc_a in ${1+\"$@\"};\n do\n case \"$_cc_a\" in \n -*-filter* | -*-pager* | -*-vi…

Bash input={"command":"python3 -c \"import json; d=json.load(open('/root/.claude/settings.json')); print('valid JSON'); print('PreToolUse present:', 'PreToolUse' in d.get('hooks', {})); print('hook keys:', list(d['hooks'].keys()))\"","description":"Validate settings.json syntax and confirm PreToolUse/rtk hook removed"} output={"stdout":"valid JSON\nPreToolUse present: False\nhook keys: ['SessionStart', 'UserPromptSubmit', 'PostToolUse', 'Stop', 'SessionEnd']","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/root/.claude/settings.json","old_string":" \"hooks\": {\n \"PreToolUse\": [\n {\n \"matcher\": \"Bash\",\n \"hooks\": [\n {\n \"type\": \"command\",\n \"command\": \"rtk hook claude\"\n }\n ]\n }\n ],\n \"SessionStart\": [","new_string":" \"hooks\": {\n \"SessionStart\": [","replace_all":false} output={"filePath":"/root/.claude/settings.json","oldString":" \"hooks\": {\n \"PreToolUse\": [\n {\n \"matcher\": \"Bash\",\n \"hooks\": [\n {\n \"type\": \"command\",\n \"command\": \"rtk hook claude\"\n }\n ]\n }\n ],\n \"SessionStart\": [","newString":" \"hooks\": {\n \"SessionStart\": [","originalFile":"{\n \"permissions\": {\n \"allow\": [\n \"Bash(source *)\"\n ],\n \"defaultMode\": \"auto\"\n },…

Read input={"file_path":"/root/.claude/settings.json"} output={"type":"text","file":{"filePath":"/root/.claude/settings.json","content":"{\n \"permissions\": {\n \"allow\": [\n \"Bash(source *)\"\n ],\n \"defaultMode\": \"auto\"\n },\n \"model\": \"sonnet\",\n \"hooks\": {\n \"PreToolUse\": [\n {\n \"matcher\": \"Bash\",\n \"hooks\": [\n {\n \"type\": \"command\",\n \"command\": \"rtk hook claude\"\n }\n ]\n }\n ],\n \"SessionStart\": [\n {\n \"hoo…

Skill input={"skill":"update-config","arguments":"disable rtk hook (PreToolUse Bash hook running \"rtk hook claude\") on this server — user reported it silently returned fake \"[ok] Files are identical\" output for diff command that should have shown real differences, which is unsafe for verification-critical shell commands"} output={"success":true,"commandName":"update-config","allowedTools":["Read"]}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"=== real diff check via /usr/bin/diff ===\"\nfor f in knowledge-graph-agent.md sre-agent.md swe-agent.md debugger-agent.md orchestrator-agent.md README.md _shared/agent-boilerplate.md; do\n echo \"--- $f ---\"\n /usr/bin/diff -q \"claude-agents/$f\" \"$HOME/.claude/agents/$f\"\ndone\necho \"=== exit codes above: none printed means identical ===\"","description":"Independently re-verify sync … output={"stdout":"=== real diff check via /usr/bin/diff ===\n--- knowledge-graph-agent.md ---\n--- sre-agent.md ---\n--- swe-agent.md ---\n--- debugger-agent.md ---\n--- orchestrator-agent.md ---\n--- README.md ---\n--- _shared/agent-boilerplate.md ---\n=== exit codes above: none printed means identical ===","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","offset":168,"limit":8} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","content":"| `resolution` | `confidence` | When it applies |\n|---|---|---|\n| `direct` | 1.0 | AST/parser resolved import → file → symbol directly (Python `ast`, `go list -json`, `tsc`) |\n| `import_map` | 0.95 | Qualified name resolved via file's import alias map |\n| `same_module` | 0.90 | Unqualified local call resolved to enclosi…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","offset":158,"limit":14} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","content":"|---|---|---|\n| `direct` | 1.0 | AST/parser resolved import → file → symbol directly |\n| `import_map` | 0.95 | Qualified name via file's import alias map |\n| `same_module` | 0.90 | Unqualified local call, enclosing module scope |\n| `import_map_suffix` | 0.85 | Suffix match against import map when exact lookup fails |\n| `u…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","offset":156,"limit":14} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","content":"### Edge resolution and confidence\n\nEvery `calls`, `called_by`, `implements`, and `instantiates` edge is object, not bare string, and carries `resolution` + `confidence`:\n\n```yaml\ncalls:\n  - target: insert_event_row\n    file: bq_client.py\n    resolution: import_map\n    confidence: 0.95\n```\n\n| `resolution` | `confid…

Agent input={"description":"Run Task 13: final regression sweep","prompt":"You are running Task 13: Full regression sweep — sync, cross-file consistency, final validation.\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All comm… output={"status":"completed","prompt":"You are running Task 13: Full regression sweep — sync, cross-file consistency, final validation.\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All commands run here. Do NOT touch …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-13-report.md","content":"# Task 13 Report — Full regression sweep\n\nWorking directory confirmed: `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling`, branch `worktree-knowledge-graph-tooling`.\n\n**Environment note relevant to this whole run:** Claude Code `PreToolUse` hook (`rtk hook claude`, from `~/.claude/settings.json`) transparently rewrites… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-13-report.md","content":"# Task 13 Report — Full regression sweep\n\nWorking directory confirmed: `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling`, branch `worktree-knowledge-graph-tooling`.\n\n**Environment note relevant to this whole run:** Claude Code `PreToolUse` hook (`rtk hook claude`, from `~/.claude/settings.json`) transpa…

Bash input={"command":"/usr/bin/git status --porcelain"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/grep -rln \"knowledge-graph.index.yaml\" claude-agents/.claude/skills/ CLAUDE.md"} output={"stdout":"claude-agents/sre-agent.md\nclaude-agents/orchestrator-agent.md\nclaude-agents/swe-agent.md\nclaude-agents/_shared/agent-boilerplate.md\nclaude-agents/README.md\nclaude-agents/debugger-agent.md\nclaude-agents/knowledge-graph-agent.md\n.claude/skills/knowledge-graph/SKILL.md\n.claude/skills/swe/SKILL.md\n.claude/skills/sre/SKILL.md\n.claude/skills/orchestrator/references/phase-0-discovery.md\nCLAUDE.md","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/cp -R claude-agents/. /root/.claude/agents/\n/usr/bin/diff -rq claude-agents/ /root/.claude/agents/ --exclude='.git'\necho \"STEP5_DIFF_EXIT=$?\""} output={"stdout":"STEP5_DIFF_EXIT=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/grep -n -B2 -A9 '|.resolution. |.confidence. |'.claude/skills/knowledge-graph/SKILL.md"} output={"stdout":"155-```\n156-\n157:| `resolution` | `confidence` | When it applies |\n158-|---|---|---|\n159-| `direct` | 1.0 | AST/parser resolved import → file → symbol directly |\n160-| `import_map` | 0.95 | Qualified name via the file's import alias map |\n161-| `same_module` | 0.90 | Unqualified local call, enclosing module scope |\n162-| `import_map_suffix` | 0.85 | Suffix match against import map when exact lookup fails |\n163-| `unique_name` | 0.75 | Globally unique identifier via reverse ind…

Bash input={"command":"/usr/bin/grep -n -B2 -A9 '|.resolution. |.confidence. |' claude-agents/knowledge-graph-agent.md"} output={"stdout":"166-```\n167-\n168:| `resolution` | `confidence` | When it applies |\n169-|---|---|---|\n170-| `direct` | 1.0 | AST/parser resolved import → file → symbol directly (Python `ast`, `go list -json`, `tsc`) |\n171-| `import_map` | 0.95 | Qualified name resolved via the file's import alias map |\n172-| `same_module` | 0.90 | Unqualified local call resolved to the enclosing module scope |\n173-| `import_map_suffix` | 0.85 | Suffix match against import map when exact lookup fails |\n1…

Bash input={"command":"/usr/bin/git rev-parse master origin/main origin/master\necho \"---diff vs master---\"\n/usr/bin/git diff --stat master -- claude-agents/reviewer-agent.md.claude/skills/reviewer/\necho \"EXIT_master=$?\"\necho \"---diff vs origin/main---\"\n/usr/bin/git diff --stat origin/main -- claude-agents/reviewer-agent.md.claude/skills/reviewer/\necho \"EXIT_originmain=$?\""} output={"stdout":"8a6ca6698179adc3dbfe4d9b2a00e51eb3b0bcb9\n3b1c25f1702dce74203a1d5492d70c63689c2a1f\n2aa3577f3de3da1726d3f457573eb08add429eba\n---diff vs master---\nEXIT_master=0\n---diff vs origin/main---\n.claude/skills/reviewer/SKILL.md | 156 +++++++++++++++++++++++++++++++++++++\n claude-agents/reviewer-agent.md | 161 +++++++++++++++++++++++++++++++++++++++\n 2 files changed, 317 insertions(+)\nEXIT_originmain=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/git diff --stat main -- claude-agents/reviewer-agent.md.claude/skills/reviewer/\necho \"EXIT=$?\""} output={"stdout":"fatal: bad revision 'main'\nEXIT=128","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/git branch - | head -20\necho \"---\"\n/usr/bin/git rev-parse main 2>&1\necho \"---\"\n/usr/bin/git rev-parse master 2>&1"} output={"stdout":"+ master\n* worktree-knowledge-graph-tooling\n remotes/origin/HEAD -> origin/master\n remotes/origin/main\n remotes/origin/master\n remotes/origin/test/reviewer-agent\n---\nfatal: ambiguous argument 'main': unknown revision or path not in working tree.\nUse '--' to separate paths from revisions, like this:\n'git <command> [<revision>...] -- [<file>...]'\nmain\n---\n8a6ca6698179adc3dbfe4d9b2a00e51eb3b0bcb9","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":fals…

Bash input={"command":"/usr/bin/git rev-parse --abbrev-ref HEAD\n/usr/bin/git log --oneline -1 main 2>/dev/null\n/usr/bin/git log --oneline -1 HEAD"} output={"stdout":"worktree-knowledge-graph-tooling\n6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/git diff --stat main -- claude-agents/reviewer-agent.md.claude/skills/reviewer/ 2>/dev/null\necho \"---status---\"\n/usr/bin/git status --porcelain claude-agents/reviewer-agent.md.claude/skills/reviewer/\necho \"STEP4_EXPLICIT_DONE\""} output={"stdout":"---status---\nSTEP4_EXPLICIT_DONE","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk read /root/.claude/settings.json 2>/dev/null | head -50; echo \"---\"; rtk ls -la ~/.claude/hooks 2>/dev/null; rtk read ~/.claude/settings.json 2>/dev/null | grep -A5 -i hook"} output={"stdout":"{\n \"permissions\": {\n \"allow\": [\n \"Bash(source *)\"\n ],\n \"defaultMode\": \"auto\"\n },\n \"model\": \"sonnet\",\n \"hooks\": {\n \"PreToolUse\": [\n {\n \"matcher\": \"Bash\",\n \"hooks\": [\n {\n \"type\": \"command\",\n \"command\": \"rtk hook claude\"\n }\n ]\n }\n ],\n \"SessionStart\": [\n {\n \"hooks\": [\n {\n \"type\": \"command\",\n …

Bash input={"command":"/usr/bin/grep -L \"knowledge-graph.index.yaml\" claude-agents/sre-agent.md claude-agents/swe-agent.md claude-agents/debugger-agent.md.claude/skills/sre/SKILL.md.claude/skills/swe/SKILL.md\necho \"STEP3_EXPLICIT_EXIT=$?\""} output={"stdout":"STEP3_EXPLICIT_EXIT=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/diff \\\n <(grep -A8 '|.resolution. |.confidence. |' claude-agents/knowledge-graph-agent.md | grep '^| `' | sort) \\\n  <(grep -A8 '|.resolution. |.confidence. |'.claude/skills/knowledge-graph/SKILL.md | grep '^| `' | sort)\necho \"EXPLICIT_DIFF_EXIT=$?\""} output={"stdout":"1,3c1,3\n< | `direct` | 1.0 | AST/parser resolved import → file → symbol directly (Python `ast`, `go list -json`, `tsc`) |\n< | `import_map_suffix` | 0.85 | Suffix match against import map when exact lookup fails |\n< | `import_map` | 0.95 | Qualified name resolved via file's import alias map |\n---\n> | `direct` | 1.0 | AST/parser resolved import → file → symbol directly |\n> | `import_map_suffix` | 0.85 | Suffix match against import map when exact lookup fails |\n> | `imp…

Bash input={"command":"which rtk 2>/dev/null; echo \"---\"; type diff 2>/dev/null; echo \"---\"; alias diff 2>/dev/null; echo \"---environment---\"; environment | grep -i rtk"} output={"stdout":"/root/.local/bin/rtk\n---\ndiff is /usr/bin/diff\n---\n---env---","stderr":"","interrupted":false,"isImage":false,"returnCodeInterpretation":"No matches found","noOutputExpected":false}

Bash input={"command":"rtk git diff --stat main -- claude-agents/reviewer-agent.md.claude/skills/reviewer/ 2>/dev/null\ngit status --porcelain claude-agents/reviewer-agent.md.claude/skills/reviewer/\necho \"STEP4_DONE\""} output={"stdout":"STEP4_DONE","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -L \"knowledge-graph.index.yaml\" claude-agents/sre-agent.md claude-agents/swe-agent.md claude-agents/debugger-agent.md.claude/skills/sre/SKILL.md.claude/skills/swe/SKILL.md\necho \"STEP3_EXIT=$?\""} output={"stdout":"STEP3_EXIT=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff \\\n <(grep -A8 '|.resolution. |.confidence. |' claude-agents/knowledge-graph-agent.md | grep '^| `' | sort) \\\n  <(grep -A8 '|.resolution. |.confidence. |'.claude/skills/knowledge-graph/SKILL.md | grep '^| `' | sort)\necho \"STEP2_EXIT=$?\""} output={"stdout":"[ok] Files are identical\nSTEP2_EXIT=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"python3 scripts/check_agent_refs.py; echo \"EXIT_CODE=$?\""} output={"stdout":". distribution — copy sites ship subdirectories\n PASS\nB. reference — agents name path that resolves at runtime\n PASS\n\nPASS — both invariants hold\nEXIT_CODE=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-13-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-13-brief.md","content":"### Task 13: Full regression sweep — sync, cross-file consistency, final validation\n\n**Files:**\n- No new edits. Verification + sync only.\n\n**Interfaces:**\n- Consumes: every field/file name introduced in Tasks 1–12. This task's job is proving they agree with each other.\n\n- [ ] **Step 1: Run existing sibling-reference regressi…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 13\ngit rev-parse HEAD","description":"Generate Task 13 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-13-brief.md: 50 lines\n6ef2c5db50a9986e5e4a097925b2225734131837","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"13","status":"in_progress"} output={"success":true,"taskId":"13","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"12","status":"completed"} output={"success":true,"taskId":"12","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 12: complete (commit 9d6a6dd..6ef2c5d, review clean; main checkout stray edits discarded with user confirmation)\nEOF","description":"Append Task 12 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 12 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-brief.md\n\nGlobal constraint: `CLAUDE.md` is NOT under `claude-agents/`, so `cp -R claude-agents/. ~/.claude/agents/` sync rule does NOT apply to this task.\n\n## What Implementer… output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-brief.md\n\nGlobal constraint: `CLAUDE.md` is NOT under `claude-agents/`, so `cp -R claude-agents/. ~/.claude/agents/` sync rule does NOT apply to this task.\n\n## What Implementer Claims They Built\n\nRead:…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi && echo \"---status---\" && rtk git status --short && echo \"---diff---\" && rtk git diff --stat CLAUDE.md"} output={"stdout":"---status---\n??.claude/worktrees/\n?? \"Using Knowledge Graph in Software Development.md\"---diff---","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi && rtk git status --short CLAUDE.md && rtk git diff CLAUDE.md | head -50"} output={"stdout":"ok","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","offset":53,"limit":15} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs` l…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","offset":35,"limit":15} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it during **§3 Classify root cause** — small, cheap. It's query-first summary of **write-once POC baseline** built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Trace call path with same blast-radius BFS `swe-agent` u…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","offset":35,"limit":10} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — small, cheap, always worth it. It's query-first summary (metadata + entry points + hubs) of **write-once POC baseline** built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Run blast-radius query before you change …

Bash input={"command":"rtk grep -n \"reverse-BFS\\|blast radius\\|hubs\\|called_by\\|knowledge-graph\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md"} output={"stdout":"16 matches in 3 files:\n\n/.../claude-agents/debugger-agent.md:37:If `knowledge-graph.index.yaml` exists at repository root, `Read` it during **§...\n/.../claude-agents/debugger-agent.md:39:**Trace call path with same blast-radius BFS `swe-agent` uses** (reci...\n/.../claude-agents/debugger-agent.md:43:**Do not `Read` full `knowledge-graph.yaml`.** Query it via `Grep` or...\n/.../claude-agents/debugger-agent.md:45:**It is read-only for you.** Never write, patch, or corre…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","content":"# Shared agent boilerplate\n\nRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n\nThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (pro…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","content":"---\nname: knowledge-graph-agent\ndescription: Static code-analysis subagent, dispatched ONLY by orchestrator-agent. Do NOT invoke from main conversation and do NOT invoke from any other subagent — it is internal step of orchestration pipeline, not standalone tool. Scans source files (Python, JS/TS, Go, Java, Rust), bu…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9d6a6dd..6ef2c5d.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9d6a6dd..6ef2c5d.diff","content":"# Review package: 9d6a6dd..HEAD\n\n## Commits\n6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index\n\n## Files changed\n CLAUDE.md | 4 +++-\n 1 file changed, 3 insertions(+), 1 deletion(-)\n\n## Diff\ndiff --git/CLAUDE.md b/CLAUDE.md\nindex 427f507..a51b730 100644\n---/CLAUDE.md\n++…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-report.md","content":"# Task 12 Report: CLAUDE.md Knowledge Graph Section Update\n\n## Status\n**DONE**\n\n## Summary\nSuccessfully applied knowledge-graph section update to `CLAUDE.md` in worktree with one iteration required to identify and edit correct file path.\n\n## Commits Created\n- `6ef2c5d` documentation(CLAUDE.md): describe confidence-scored ed…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-brief.md","content":"### Task 12: `CLAUDE.md` — Knowledge graph section update\n\n**Files:**\n- Modify: `CLAUDE.md`\n\n- [ ] **Step 1: Update section**\n\n```\nold_string:\n`sre-agent`, `swe-agent`, and `debugger-agent` read the baseline and are read-only on it; SWE in particular checks `called_by` for blast radius before changing a signature. `reviewer…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 9d6a6dd HEAD","description":"Generate Task 12 review package"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9d6a6dd..6ef2c5d.diff: 1 commit(s), 3581 bytes","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\ngit status --porcelain","description":"Confirm worktree state before generating Task 12 review package"} output={"stdout":"worktree-knowledge-graph-tooling\n6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

yes, continue with Task 12 review

TaskUpdate input={"taskId":"12","status":"in_progress"} output={"success":true,"taskId":"12","updatedFields":[]}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md","offset":38,"limit":6} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md","content":"\n`knowledge-graph.yaml` at **target project's** root is ground truth, not cache. `knowledge-graph-agent` builds it once at Phase 0 pre-step ( first action of run) and never rewrites it. When code drifts off it, agent writes `knowledge-graph.current.yaml` (scratch, gitignored in target repository) and reports delta — it does not update baseline. Only explicit `Mode: REB…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\ngit restore.claude/skills/sre/SKILL.md CLAUDE.md\ngit status --porcelain","description":"Discard two stray uncommitted edits on master"} output={"stdout":"??.claude/worktrees/\n?? \"Using Knowledge Graph in Software Development.md\"","stderr":"\nShell cwd was reset to /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\ngit status\necho \"---\"\nfind. -maxdepth 3 -iname \"*.bak\" 2>/dev/null","description":"Full status check on main checkout before cleanup"} output={"stdout":"On branch master\nYour branch is ahead of 'origin/master' by 2 commits.\n (use \"git push\" to publish your local commits)\n\nChanges not staged for commit:\n (use \"git add <file>...\" to update what will be committed)\n (use \"git restore <file>...\" to discard changes in working directory)\n\tmodified:.claude/skills/sre/SKILL.md\n\tmodified: CLAUDE.md\n\nUntracked files:\n (use \"git add <file>...\" to include in what will be committed)\n\t.claude/worktrees/\n\tUsing Knowl…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi\ngit diff --.claude/skills/sre/SKILL.md | head -50","description":"Inspect unexpected modification to sre SKILL.md on master"} output={"stdout":"diff --git/.claude/skills/sre/SKILL.md b/.claude/skills/sre/SKILL.md\nindex e17729d..a12dce6 100644\n---/.claude/skills/sre/SKILL.md\n+++ b/.claude/skills/sre/SKILL.md\n@@ -36,10 +36,16 @@ Gate decisions argue from P0/P1 counts only — P2/P3 never block.\n \n ## Knowledge graph reference\n \n-If `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths…

Bash input={"command":"echo \"=== main checkout status ===\"\ngit -C /home/etc/claude-code/work/beehive-kfi status --porcelain\ngit -C /home/etc/claude-code/work/beehive-kfi log --oneline -1\necho \"=== main checkout CLAUDE.md diff vs its own HEAD ===\"\ngit -C /home/etc/claude-code/work/beehive-kfi diff -- CLAUDE.md\necho \"=== worktree status ===\"\ncd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\ngit status --porcelain"… output={"stdout":"=== main checkout status ===\n M.claude/skills/sre/SKILL.md\n M CLAUDE.md\n??.claude/worktrees/\n?? \"Using Knowledge Graph in Software Development.md\"\n8a6ca66 documentation(plans): implementation plan for knowledge-graph accuracy/token tooling\n=== main checkout CLAUDE.md diff vs its own HEAD ===\ndiff --git/CLAUDE.md b/CLAUDE.md\nindex 427f507..a51b730 100644\n---/CLAUDE.md\n+++ b/CLAUDE.md\n@@ -40,7 +40,9 @@ Older drafts said 6 (Database, System Design, Logging, Monitoring, Error Ha…

Agent input={"description":"Implement plan Task 12: CLAUDE.md update","prompt":"You are implementing Task 12: `CLAUDE.md` — Knowledge graph section update\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen … output={"status":"completed","prompt":"You are implementing Task 12: `CLAUDE.md` — Knowledge graph section update\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen here, never in main checkout at …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-report.md","content":"# Task 12 Report: CLAUDE.md Knowledge Graph Section Update\n\n## Status\n**DONE**\n\n## Summary\nSuccessfully applied knowledge-graph section update to `CLAUDE.md` in worktree with one iteration required to identify and edit correct file path.\n\n## Commits Created\n- `6ef2c5d` documentation(CLAUDE.md): describe confidence-scored edges, hubs, and qu… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-report.md","content":"# Task 12 Report: CLAUDE.md Knowledge Graph Section Update\n\n## Status\n**DONE**\n\n## Summary\nSuccessfully applied knowledge-graph section update to `CLAUDE.md` in worktree with one iteration required to identify and edit correct file path.\n\n## Commits Created\n- `6ef2c5d` documentation(CLAUDE.md): describe confidence-scored edges, h…

Bash input={"command":"rtk git log --oneline -1"} output={"stdout":"6ef2c5d documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git diff --stat HEAD~1"} output={"stdout":"CLAUDE.md | 4 +++-\n 1 file changed, 3 insertions(+), 1 deletion(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add CLAUDE.md && rtk git commit -m \"documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index\""} output={"stdout":"ok 1 file changed, 3 insertions(+), 1 deletion(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"resolution\\|confidence\\|hubs\\|index.yaml\\|reverse-BFS\" CLAUDE.md"} output={"stdout":"2 matches in 1 files:\n\nCLAUDE.md:43:Every `calls`/`called_by`/`implements`/`instantiates` edge carries `resolutio...\nCLAUDE.md:45:`sre-agent`, `swe-agent`, and `debugger-agent` read baseline and are read...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/CLAUDE.md","old_string":"`sre-agent`, `swe-agent`, and `debugger-agent` read baseline and are read-only on it; SWE in particular checks `called_by` for blast radius before changing signature. `reviewer-agent` deliberately does not consume it. orchestrator never reads any graph file — Cardinal Rule — it dispatches and reads final message.","new_string":"Every `calls`/`called_by`/`implement… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/CLAUDE.md","oldString":"`sre-agent`, `swe-agent`, and `debugger-agent` read the baseline and are read-only on it; SWE in particular checks `called_by` for blast radius before changing a signature. `reviewer-agent` deliberately does not consume it. The orchestrator never reads any graph file — Cardinal Rule — it dispatches and reads the final message.","newString":"Every `calls`/`called_by`/`implements`/…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/CLAUDE.md","offset":40,"limit":10} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/CLAUDE.md","content":"\n`INCREMENTAL` mode is gone — it was mode that silently overwrote baseline. Modes are now `FULL` / `VERIFY` / `COMPARE` / `REBASELINE`.\n\n`sre-agent`, `swe-agent`, and `debugger-agent` read baseline and are read-only on it; SWE in particular checks `called_by` for blast radius before changing signature. `reviewer-agent` deliberately does not co…

Bash input={"command":"rtk ls -i /home/etc/claude-code/work/beehive-kfi/CLAUDE.md /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/CLAUDE.md"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/CLAUDE.md  17.0K\n/home/etc/claude-code/work/beehive-kfi/CLAUDE.md  17.8K","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"sed -n '40,50p' /home/etc/claude-code/work/beehive-kfi/CLAUDE.md"} output={"stdout":"`INCREMENTAL` mode is gone — it was mode that silently overwrote baseline. Modes are now `FULL` / `VERIFY` / `COMPARE` / `REBASELINE`.\n\nEvery `calls`/`called_by`/`implements`/`instantiates` edge carries `resolution` + `confidence` ( `direct` AST resolution down to `suffix_match` heuristic at 0.55) — consumers grep-confirm anything below 0.85 before citing it. `hubs` section ranks functions/files by confidence-weighted fan-in, and `knowledge-graph.index.yaml` — metadata …

Bash input={"command":"git ls-tree HEAD CLAUDE.md"} output={"stdout":"100644 blob 427f50724e397976761c44aadf10c9cbdd876172\tCLAUDE.md","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"git ls-files CLAUDE.md && git hash-object CLAUDE.md"} output={"stdout":"CLAUDE.md\n427f50724e397976761c44aadf10c9cbdd876172","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add - && rtk git status"} output={"stdout":"ok (nothing to add)\n* worktree-knowledge-graph-tooling\nclean — nothing to commit","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"stat /home/etc/claude-code/work/beehive-kfi/CLAUDE.md"} output={"stdout":" File: /home/etc/claude-code/work/beehive-kfi/CLAUDE.md\n Size: 18267 \tBlocks: 40 IO Block: 4096 regular file\nDevice: 8,1\tInode: 1334394 Links: 1\nAccess: (0644/-rw-r--r--) Uid: ( 0/ root) Gid: ( 0/ root)\nAccess: 2026-07-16 09:04:49.661747412 +0000\nModify: 2026-07-16 09:04:43.944724912 +0000\nChange: 2026-07-16 09:04:43.950724935 +0000\n Birth: 2026-07-16 09:04:43.942724904 +0000","stderr":"","interrupted":false,"isImage":false,"noOutputExpected…

Bash input={"command":"rtk git show HEAD:CLAUDE.md | sed -n '37,50p'"} output={"stdout":"## Knowledge graph — write-once POC baseline\n\n`knowledge-graph.yaml` at **target project's** root is ground truth, not cache. `knowledge-graph-agent` builds it once at Phase 0 pre-step ( first action of run) and never rewrites it. When code drifts off it, agent writes `knowledge-graph.current.yaml` (scratch, gitignored in target repository) and reports delta — it does not update baseline. Only explicit `Mode: REBASELINE`, which orchestrator emits …

Bash input={"command":"rtk git show HEAD:CLAUDE.md | grep - 5 \"Knowledge graph\""} output={"stdout":"## Knowledge graph — write-once POC baseline\n\n`knowledge-graph.yaml` at **target project's** root is ground truth, not cache. `knowledge-graph-agent` builds it once at Phase 0 pre-step ( first action of run) and never rewrites it. When code drifts off it, agent writes `knowledge-graph.current.yaml` (scratch, gitignored in target repository) and reports delta — it does not update baseline. Only explicit `Mode: REBASELINE`, which orchestrator emits …

Bash input={"command":"rtk git show HEAD:CLAUDE.md | grep - 2 \"Every.*calls\""} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"returnCodeInterpretation":"No matches found","noOutputExpected":false}

Bash input={"command":"rtk git diff HEAD -- CLAUDE.md 2>&1 | head -100"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"find /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling -name \"settings*.json\" -o -name \"*.hook\" | xargs ls -la 2>/dev/null || echo \"No matching files\""} output={"stdout":"total 116\ndrwxr-xr-x 11 root root 4096 Jul 16 07:45.\ndrwxr-xr-x  3 root root 4096 Jul 16 07:45..\ndrwxr-xr-x  3 root root 4096 Jul 16 07:45.claude\n-rw-r--r-- 1 root root 86 Jul 16 07:45.git\ndrwxr-xr-x  3 root root 4096 Jul 16 07:45.github\n-rw-r--r-- 1 root root 872 Jul 16 07:45.gitignore\ndrwxr-xr-x  3 root root 4096 Jul 16 07:45.superpowers\n-rw-r--r-- 1 root root 26945 Jul 16 07:45 Architectural Design and Implementation of Subagents in Claude Code CLI.md\n-…

Bash input={"command":"rtk grep - 2 \"Every.*calls.*called_by\" /home/etc/claude-code/work/beehive-kfi/CLAUDE.md"} output={"stdout":"Every `calls`/`called_by`/`implements`/`instantiates` edge carries `resolution` + `confidence` ( `direct` AST resolution down to `suffix_match` heuristic at 0.55) — consumers grep-confirm anything below 0.85 before citing it. `hubs` section ranks functions/files by confidence-weighted fan-in, and `knowledge-graph.index.yaml` — metadata + entry points + hubs only, written alongside baseline on same write-once lifecycle — is what consumers `Read` first. full `knowledge-…

Bash input={"command":"rtk git log --oneline -- CLAUDE.md | head -5"} output={"stdout":"d7737d0 fix(agents): acceptEdits everywhere except orchestrator; correct...\n98a5f63 fix(agents): make shared/template files resolvable at runtime\n92f30a5 documentation: document write-once knowledge-graph baseline contract\n479f245 documentation: document pip install/upgrade flow in README, switch to plain HTTPS\na4823ec feat(packaging): add pip-installable beehive-agents package with tag...\n\nthread 'main' (1830681) panicked at /rustc/59807616e1fa2540724bfbac14d7976d7e4a3860/library/std/s…

Bash input={"command":"rtk git diff CLAUDE.md | head -50"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk ls -la /home/etc/claude-code/work/beehive-kfi/.git/hooks/ 2>/dev/null | head -20"} output={"stdout":"applypatch-msg.sample 478B\ncommit-msg.sample 896B\nfsmonitor-watchman.sample 4.6K\npost-update.sample 189B\npre-applypatch.sample 424B\npre-commit.sample 1.6K\npre-merge-commit.sample 416B\npre-push.sample 1.3K\npre-rebase.sample 4.8K\npre-receive.sample 544B\nprepare-commit-msg.sample 1.5K\npush-to-checkout.sample 2.7K\nsendemail-validate.sample 2.3K\nupdate.sample 3.6K","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"file /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.git && rtk read /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.git"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.git: ASCII text\ngitdir: /home/etc/claude-code/work/beehive-kfi/.git/worktrees/knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"/usr/bin/git status"} output={"stdout":"On branch worktree-knowledge-graph-tooling\nnothing to commit, working tree clean","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk ls -la /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/ | head -20"} output={"stdout":".claude/\n.github/\n.superpowers/\nbeehive_agents/\nclaude-agents/\ndataset/\ndocs/\nkredivo-docs/\nscripts/\n.git 86B\n.gitignore 872B\nArchitectural Design and Implementation of Subagents in Claude Code CLI.md 26.3K\nCLAUDE.md 17.0K\nREADME.md 10.1K\npyproject.toml 644B","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"pwd && rtk git log --oneline -3"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule p...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md","offset":40,"limit":10} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md","content":"\n`INCREMENTAL` mode is gone — it was mode that silently overwrote baseline. Modes are now `FULL` / `VERIFY` / `COMPARE` / `REBASELINE`.\n\nEvery `calls`/`called_by`/`implements`/`instantiates` edge carries `resolution` + `confidence` ( `direct` AST resolution down to `suffix_match` heuristic at 0.55) — consumers grep-confirm anything below 0.85 before citing it. `hubs` section ranks func…

Bash input={"command":"rtk git status"} output={"stdout":"* worktree-knowledge-graph-tooling\nclean — nothing to commit","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add CLAUDE.md && rtk git commit -m \"documentation(CLAUDE.md): describe confidence-scored edges, hubs, and query-first index\""} output={"stdout":"ok (nothing to add)\nok (nothing to commit)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"resolution\\|confidence\\|hubs\\|index.yaml\\|reverse-BFS\" /home/etc/claude-code/work/beehive-kfi/CLAUDE.md"} output={"stdout":"2 matches in 1 files:\n\n/home/etc/claude-code/work/beehive-kfi/CLAUDE.md:43:Every `calls`/`called_by`/`implements`/`instantiates` edge carries `resolutio...\n/home/etc/claude-code/work/beehive-kfi/CLAUDE.md:45:`sre-agent`, `swe-agent`, and `debugger-agent` read baseline and are read...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md","old_string":"`sre-agent`, `swe-agent`, and `debugger-agent` read baseline and are read-only on it; SWE in particular checks `called_by` for blast radius before changing signature. `reviewer-agent` deliberately does not consume it. orchestrator never reads any graph file — Cardinal Rule — it dispatches and reads final message.","new_string":"Every `calls`/`called_by`/`implements`/`instantiates` edge carries `resolution… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md","oldString":"`sre-agent`, `swe-agent`, and `debugger-agent` read the baseline and are read-only on it; SWE in particular checks `called_by` for blast radius before changing a signature. `reviewer-agent` deliberately does not consume it. The orchestrator never reads any graph file — Cardinal Rule — it dispatches and reads the final message.","newString":"Every `calls`/`called_by`/`implements`/`instantiates` edge carries `resolution` +…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/CLAUDE.md","content":"# CLAUDE.md\n\nThis file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.\n\n## What this repository is\n\nThis is **not** application codebase. It is **definition repository for Claude Code subagents, skills, and hooks** used to lift POC-grade projects (originally targeted at internal Kredivo / Beehive services) to production grade. Artifacts here are consumed by …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-brief.md","content":"### Task 12: `CLAUDE.md` — Knowledge graph section update\n\n**Files:**\n- Modify: `CLAUDE.md`\n\n- [ ] **Step 1: Update section**\n\n```\nold_string:\n`sre-agent`, `swe-agent`, and `debugger-agent` read the baseline and are read-only on it; SWE in particular checks `called_by` for blast radius before changing a signature. `reviewer…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 12\ngit rev-parse HEAD","description":"Generate Task 12 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-12-brief.md: 31 lines\n9d6a6ddc5bbe68ac06218465a5d26b8145756aa5","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"12","status":"in_progress"} output={"success":true,"taskId":"12","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"11","status":"completed"} output={"success":true,"taskId":"11","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 11: complete (commit 5b710c0..9d6a6dd, review clean)\nEOF","description":"Append Task 11 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 11 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-brief.md\n\nGlobal constraint: per CLAUDE.md, any edit under `claude-agents/` requires `cp -R claude-agents/. ~/.claude/agents/`.\n\n## What Implementer Claims They Built\n\nRead: /hom… output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-brief.md\n\nGlobal constraint: per CLAUDE.md, any edit under `claude-agents/` requires `cp -R claude-agents/. ~/.claude/agents/`.\n\n## What Implementer Claims They Built\n\nRead: /home/etc/claude-code/work/beeh…

Bash input={"command":"awk 'NR==9 || NR==18{print NR\": \"$0}' claude-agents/README.md | awk -F'|' '{print NF, $0}' | cut -c1-5"} output={"stdout":"6 9: \n6 18:","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","content":"---\nname: knowledge-graph-agent\ndescription: Static code-analysis subagent, dispatched ONLY by orchestrator-agent. Do NOT invoke from main conversation and do NOT invoke from any other subagent — it is internal step of orchestration pipeline, not standalone tool. Scans source files (Python, JS/TS, Go, Java, Rust), bu…

Bash input={"command":"rtk diff -q claude-agents/README.md ~/.claude/agents/README.md; echo \"EXIT:$?\"; echo \"---git log---\"; rtk git log --oneline -3; echo \"---git status---\"; rtk git status --short"} output={"stdout":"EXIT:0\n---git log---\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule p...\n---git status---\nok","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-5b710c0..9d6a6dd.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-5b710c0..9d6a6dd.diff","content":"# Review package: 5b710c0..HEAD\n\n## Commits\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n\n## Files changed\n claude-agents/README.md | 2 +-\n 1 file changed, 1 insertion(+), 1 deletion(-)\n\n## Diff\ndiff --git/claude-agents/README.md b/claude-agents/README.md\ni…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-report.md","content":"# Task 11 Report: `claude-agents/README.md` — knowledge-graph-agent row update\n\n## Status: DONE\n\n## Execution Summary\n\n### Step 1: Edit Applied\n- Updated `knowledge-graph-agent` row in roster table at line 18 of `claude-agents/README.md`\n- Replaced old description with new one that documents:\n - Query-first `k…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-brief.md","content":"### Task 11: `claude-agents/README.md` — knowledge-graph-agent row update\n\n**Files:**\n- Modify: `claude-agents/README.md`\n\n- [ ] **Step 1: Update roster row**\n\n```\nold_string:\n| `knowledge-graph-agent.md` | `knowledge-graph-agent` | haiku | **Orchestrator-only** internal step (dispatched at **Phase 0 pre-step**, before …

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 5b710c0 HEAD","description":"Verify Task 11 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\n9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule preserved)\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-5b710c0..9d6a6dd.diff: …

Agent input={"description":"Implement plan Task 11: README row update","prompt":"You are implementing Task 11: `claude-agents/README.md` — knowledge-graph-agent row update\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edit… output={"status":"completed","prompt":"You are implementing Task 11: `claude-agents/README.md` — knowledge-graph-agent row update\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen here, never in m…

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-report.md","content":"# Task 11 Report: `claude-agents/README.md` — knowledge-graph-agent row update\n\n## Status: DONE\n\n## Execution Summary\n\n### Step 1: Edit Applied\n- Updated `knowledge-graph-agent` row in roster table at line 18 of `claude-agents/README.md`\n- Replaced old description with new one that documents:\n - Query-first `knowledge-graph.index.… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-report.md","content":"# Task 11 Report: `claude-agents/README.md` — knowledge-graph-agent row update\n\n## Status: DONE\n\n## Execution Summary\n\n### Step 1: Edit Applied\n- Updated the `knowledge-graph-agent` row in the roster table at line 18 of `claude-agents/README.md`\n- Replaced the old description with the new one that documents:\n  - Query-first `knowled…

Bash input={"command":"rtk git log --oneline -1 && echo \"---\" && rtk git diff --stat HEAD~1..HEAD"} output={"stdout":"9d6a6dd documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\n---\nclaude-agents/README.md | 2 +-\n 1 file changed, 1 insertion(+), 1 deletion(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add claude-agents/README.md && rtk git commit -m \"documentation(README): note confidence-scored edges, hubs, query-first index on knowledge-graph-agent\""} output={"stdout":"ok 1 file changed, 1 insertion(+), 1 deletion(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cp -R /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/. ~/.claude/agents/"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":true}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md","offset":17,"limit":3} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md","content":"| `debugger-agent.md` | `debugger-agent` | sonnet | Triage subagent for test failures. Reproduces locally, isolates root cause (code vs configuration vs infra vs spec), proposes minimal patch diff in `docs/debugger/triage-*.md`. Hands patch to swe-agent in FIX mode — never modifies production source. |\n| `knowledge-graph-agent.md` | `knowledge-graph-ag…

Bash input={"command":"rtk grep -n \"confidence\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md"} output={"stdout":"1 matches in 1 files:\n\n18:0:drift lands in `knowledge-graph.current.yaml` (scratch, gitignored) plus dr...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"confidence\\|hubs\\|index.yaml\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md"} output={"stdout":"1 matches in 1 files:\n\n18:0:drift lands in `knowledge-graph.current.yaml` (scratch, gitignored) plus dr...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md","old_string":"| `knowledge-graph-agent.md` | `knowledge-graph-agent` | haiku | **Orchestrator-only** internal step (dispatched at **Phase 0 pre-step**, before discovery; halts if invoked directly). Parses Python/JS/TS/Go/Java/Rust via AST where available and writes `knowledge-graph.yaml` at project root — **write-once POC baseline**, ground-truth map of project flow… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md","oldString":"| `knowledge-graph-agent.md` | `knowledge-graph-agent` | haiku | **Orchestrator-only** internal step (dispatched at **Phase 0 pre-step**, before discovery; halts if invoked directly). Parses Python/JS/TS/Go/Java/Rust via AST where available and writes `knowledge-graph.yaml` at project root — **write-once POC baseline**, ground-truth map of project flow t…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/README.md","content":"# beehive-agents\n\nClaude Code subagent port of `dodo-agents/` (originally VS Code Copilot agents). Implements **parent-driven delegation and consolidation** topology described in *Architectural Design and Implementation of Subagents in Claude Code CLI*.\n\n## Roster\n\n| File | Subagent | Model | Role |\n|------|----------|-------|------|\n…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-brief.md","content":"### Task 11: `claude-agents/README.md` — knowledge-graph-agent row update\n\n**Files:**\n- Modify: `claude-agents/README.md`\n\n- [ ] **Step 1: Update roster row**\n\n```\nold_string:\n| `knowledge-graph-agent.md` | `knowledge-graph-agent` | haiku | **Orchestrator-only** internal step (dispatched at **Phase 0 pre-step**, before …

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 11\ngit rev-parse HEAD","description":"Generate Task 11 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-11-brief.md: 29 lines\n5b710c03303fa1d099b33229739d0d9a3a481422","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"11","status":"in_progress"} output={"success":true,"taskId":"11","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"10","status":"completed"} output={"success":true,"taskId":"10","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 10: complete (commit 7273b79..5b710c0, review clean, Cardinal Rule verified tree-wide)\nEOF","description":"Append Task 10 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 10 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-brief.md\n\nGlobal constraints (load-bearing for this task):\n- Same Cardinal Rule as agent surface (Task 9, already committed): orchestrator skill never `Read`s any knowledge-grap… output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-brief.md\n\nGlobal constraints (load-bearing for this task):\n- Same Cardinal Rule as agent surface (Task 9, already committed): orchestrator skill never `Read`s any knowledge-graph file variant, only notes …

Bash input={"command":"rtk git log --oneline -3 --.claude/skills/orchestrator/ && echo \"---\" && rtk git diff 7273b79..5b710c0 --stat"} output={"stdout":"5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n7881ad6 feat(orchestrator-skill): move knowledge-graph dispatch to Phase 0 pre-step\n08191fc feat(agents): add knowledge-graph agent + skill, dispatched by orchestrator only\n---\n.claude/skills/orchestrator/references/phase-0-discovery.md | 2 +-\n 1 file changed, 1 insertion(+), 1 deletion(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/orchestrator/references/phase-0-discovery.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/orchestrator/references/phase-0-discovery.md","content":"# Phase 0 — Business-Flow Feature Discovery + Goal Lock\n\nOrchestrator owns this discovery conversation. Subagents cannot prompt user, so you drive by **returning question batches to parent**; user replies in main session and re-invokes you with answers. Never delegate questioning itsel…

Bash input={"command":"rtk git log --oneline -5 -- claude-agents/orchestrator-agent.md && rtk git show 7273b79:claude-agents/orchestrator-agent.md 2>/dev/null | grep -n \"Purity holds\" -A2 -B2"} output={"stdout":"7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule p...\nd7737d0 fix(agents): acceptEdits everywhere except orchestrator; correct documentation\n98a5f63 fix(agents): make shared/template files resolvable at runtime\n01ab8ea feat(orchestrator): dispatch knowledge-graph at Phase 0, before discovery\n08191fc feat(agents): add knowledge-graph agent + skill, dispatched by orchestrator only\n143-Carry graph **path** forward…

Bash input={"command":"rtk grep -n \"Purity holds\" -A2 -B2 claude-agents/orchestrator-agent.md"} output={"stdout":"143-Carry graph **path** forward to every subagent that reads it — never contents. `knowledge-graph-agent` now also writes `knowledge-graph.index.yaml` alongside baseline (small — metadata, entry points, hubs) on same `FULL`/`REBASELINE` lifecycle; you don't need to say anything special about it — subagents locate it themselves — but `BASELINE CREATED`/`REBUILT` final message implies both files exist. On `DRIFT REPORTED`, quote drift report into Phase 1 SRE p…

Bash input={"command":"echo \"=== grep 1: phase-0-discovery.md only ===\" && rtk grep -niE \"read.{0,20}knowledge-graph\".claude/skills/orchestrator/references/phase-0-discovery.md; echo \"exit: $?\"; echo; echo \"=== grep 2: whole orchestrator skill directory ===\" && rtk grep -rniE \"read.{0,20}knowledge-graph\".claude/skills/orchestrator/; echo \"exit: $?\""} output={"stdout":"=== grep 1: phase-0-discovery.md only ===\nexit: 1\n\n=== grep 2: whole orchestrator skill directory ===\nexit: 1","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-7273b79..5b710c0.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-7273b79..5b710c0.diff","content":"# Review package: 7273b79..HEAD\n\n## Commits\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n\n## Files changed\n.claude/skills/orchestrator/references/phase-0-discovery.md | 2 +-\n 1 file changed, 1 insertion(+), 1 deletion(-)\n\n## Diff\ndiff --git/.claude/skills/orchestrator…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-report.md","content":"# Task 10 Report — `.claude/skills/orchestrator/references/phase-0-discovery.md`\n\n## Status: DONE\n\n## Summary\n\nSuccessfully mirrored Task 9's edit to orchestrator-agent.md file into orchestrator skill's Phase-0 reference doc.\n\n## Steps Completed\n\n1. **Edit Applied** — Updated \"Purity holds\" paragraph at line 26 …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-brief.md","content":"### Task 10: `.claude/skills/orchestrator/references/phase-0-discovery.md` — mirror of Task 9\n\n**Files:**\n- Modify: `.claude/skills/orchestrator/references/phase-0-discovery.md`\n\n- [ ] **Step 1: Update \"Purity holds\" paragraph**\n\n```\nold_string:\n**Purity holds:** no graph file is gate file. Do not read any of them — …

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 7273b79 HEAD","description":"Verify Task 10 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\n5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule preserved)\na4aecf2 feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-7273b79..5b710c0.diff: 1 commit(s), 2477…

Agent input={"description":"Implement plan Task 10: orchestrator skill mirror","prompt":"You are implementing Task 10: `.claude/skills/orchestrator/references/phase-0-discovery.md` — mirror of Task 9\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowle… output={"status":"completed","prompt":"You are implementing Task 10: `.claude/skills/orchestrator/references/phase-0-discovery.md` — mirror of Task 9\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-report.md","content":"# Task 10 Report — `.claude/skills/orchestrator/references/phase-0-discovery.md`\n\n## Status: DONE\n\n## Summary\n\nSuccessfully mirrored Task 9's edit to orchestrator-agent.md file into orchestrator skill's Phase-0 reference doc.\n\n## Steps Completed\n\n1. **Edit Applied** — Updated \"Purity holds\" paragraph at line 26 to include reference … output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-report.md","content":"# Task 10 Report — `.claude/skills/orchestrator/references/phase-0-discovery.md`\n\n## Status: DONE\n\n## Summary\n\nSuccessfully mirrored Task 9's edit to orchestrator-agent.md file into orchestrator skill's Phase-0 reference doc.\n\n## Steps Completed\n\n1. **Edit Applied** — Updated \"Purity holds\" paragraph at line 26 to inc…

Bash input={"command":"rtk git log -1 --oneline && rtk git diff --stat HEAD~1"} output={"stdout":"5b710c0 documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\n.claude/skills/orchestrator/references/phase-0-discovery.md | 2 +-\n 1 file changed, 1 insertion(+), 1 deletion(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add.claude/skills/orchestrator/references/phase-0-discovery.md && rtk git commit -m \"documentation(orchestrator skill): note knowledge-graph.index.yaml in Phase 0 pre-step\""} output={"stdout":"ok 1 file changed, 1 insertion(+), 1 deletion(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"sed -n '22p;26p'.claude/skills/orchestrator/references/phase-0-discovery.md"} output={"stdout":"**Do not compute `Mode:` line** — skill derives its own: `FULL` (no baseline), `VERIFY` (matches HEAD, no-op), `COMPARE` (stale → writes `knowledge-graph.current.yaml` + drift report). Pass `Mode: REBASELINE` only when human explicitly asked for rebuild at gate; never elect one yourself.\n**Purity holds:** no graph file — including `knowledge-graph.index.yaml`, written alongside baseline on same `FULL`/`REBASELINE` lifecycle — is gate file. Do not read any of…

Bash input={"command":"rtk grep -n \"[Rr]ead.*knowledge-graph\\.\\(yaml\\|current\\|index\\|poc\\)\".claude/skills/orchestrator/references/phase-0-discovery.md; echo \"EXIT_CODE: $?\""} output={"stdout":"2 matches in 2 files:\n\n22:0:` line** — the skill derives its own: `FULL` (no baseline), `VERIFY` (matches...\n26:0:** no graph file — including `knowledge-graph.index.yaml`, written alongside...\nEXIT_CODE: 0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"[Rr]ead.*knowledge-graph\\.\\(yaml\\|current\\|index\\|poc\\)\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/orchestrator/references/phase-0-discovery.md"} output={"stdout":"2 matches in 2 files:\n\n22:0:` line** — the skill derives its own: `FULL` (no baseline), `VERIFY` (matches...\n26:0:** no graph file — including `knowledge-graph.index.yaml`, written alongside...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/orchestrator/references/phase-0-discovery.md","old_string":"**Purity holds:** no graph file is gate file. Do not read any of them — they map implementation code, and your Cardinal Rule forbids reading code. `🛑` halt is non-blocking: note it and proceed to discovery without graph.","new_string":"**Purity holds:** no graph file — including `knowledge-graph.index.yaml`, written alo… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/orchestrator/references/phase-0-discovery.md","oldString":"**Purity holds:** no graph file is gate file. Do not read any of them — they map implementation code, and your Cardinal Rule forbids reading code. `🛑` halt is non-blocking: note it and proceed to discovery without graph.","newString":"**Purity holds:** no graph file — including `knowledge-graph.index.yaml`, written alongs…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/orchestrator/references/phase-0-discovery.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/orchestrator/references/phase-0-discovery.md","content":"# Phase 0 — Business-Flow Feature Discovery + Goal Lock\n\nOrchestrator owns this discovery conversation. Subagents cannot prompt user, so you drive by **returning question batches to parent**; user replies in main session and re-invokes you with answers. Never delegate questioning itsel…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-brief.md","content":"### Task 10: `.claude/skills/orchestrator/references/phase-0-discovery.md` — mirror of Task 9\n\n**Files:**\n- Modify: `.claude/skills/orchestrator/references/phase-0-discovery.md`\n\n- [ ] **Step 1: Update \"Purity holds\" paragraph**\n\n```\nold_string:\n**Purity holds:** no graph file is gate file. Do not read any of them — …

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 10\ngit rev-parse HEAD","description":"Generate Task 10 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-10-brief.md: 29 lines\n7273b7960b1c1325fe6da24eaf1796b6d7751087","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"10","status":"in_progress"} output={"success":true,"taskId":"10","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"9","status":"completed"} output={"success":true,"taskId":"9","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 9: complete (commit a4aecf2..7273b79, review clean, Cardinal Rule verified intact)\nEOF","description":"Append Task 9 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 9 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-brief.md\n\nGlobal constraints (this is load-bearing one for this task):\n- `orchestrator-agent.md`'s Cardinal Rule: it has no Edit/Bash tools and NEVER reads any implementation code or … output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-brief.md\n\nGlobal constraints (this is load-bearing one for this task):\n- `orchestrator-agent.md`'s Cardinal Rule: it has no Edit/Bash tools and NEVER reads any implementation code or ANY knowledge-graph file (…

Bash input={"command":"rtk git log --oneline -1 7273b79; echo \"---\"; rtk git show -s --format=%B 7273b79"} output={"stdout":"7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule p...\n---\ndocs(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule preserved)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"index\" claude-agents/orchestrator-agent.md"} output={"stdout":"3 matches in 3 files:\n\n143:0: POC whose code has moved off its own baseline is audit-relevant.\n145:0:...h.yaml`, `knowledge-graph.index.yaml`, `knowledge-graph.current.yaml`, `knowledg...\n208:0:...smatch on FKs; missing FK indexes; PK not `id` unsigned bigint autoincrement (Po...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n -i \"cardinal rule\\|purity holds\\|never read\\|never reads\\|does not read\\|read-only on\\|read only on\" claude-agents/orchestrator-agent.md"} output={"stdout":"21:## Cardinal Rule\n23:You have no Edit/Bash tools. only file you write is `docs/orchestrator/run-summary.md` (plus `_heartbeat.json` / `_resume-state.json` state files). You read **only** gate files: `docs/sre/business-flow-feature.md`, `docs/sre/audit-findings.md`, `docs/sre/business-flow.md`, `docs/sre/tickets-to-raise.md`, `docs/unittest/coverage-report.md`, `docs/playwright/e2e-report.md`, `docs/debugger/triage-*.md`, `docs/reviewer/review-report.md`. Never read or grep …

Bash input={"command":"echo \"=== narrow grep ===\" && rtk grep -n \"Read.*knowledge-graph\\.\" claude-agents/orchestrator-agent.md; echo \"exit=$?\" && echo \"=== broad sweep ===\" && rtk grep -niE \"read.{0,20}knowledge-graph\" claude-agents/orchestrator-agent.md; echo \"exit=$?\" && echo \"=== sync check ===\" && rtk diff -q claude-agents/orchestrator-agent.md ~/.claude/agents/orchestrator-agent.md; echo \"exit=$?\""} output={"stdout":"=== narrow grep ===\n0 matches for 'Read.*knowledge-graph\\.'\nexit=1\n=== broad sweep ===\nexit=1\n=== sync check ===\nexit=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-a4aecf2..7273b79.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-a4aecf2..7273b79.diff","content":"# Review package: a4aecf2..HEAD\n\n## Commits\n7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule preserved)\n\n## Files changed\n claude-agents/orchestrator-agent.md | 4 ++--\n 1 file changed, 2 insertions(+), 2 deletions(-)\n\n## Diff\ndiff --git/claude-age…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-report.md","content":"# Task 9 Report: orchestrator-agent.md — index file notation\n\n## Summary\n\nTask completed successfully. orchestrator-agent.md file was updated to document new `knowledge-graph.index.yaml` file written by `knowledge-graph-agent`, while preserving Cardinal Rule (orchestrator never reads any graph files).\n\n## Step 1: Edit …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-brief.md","content":"### Task 9: `orchestrator-agent.md` — note index file in Phase 0 pre-step\n\n**Files:**\n- Modify: `claude-agents/orchestrator-agent.md`\n\n**Interfaces:**\n- No new interfaces — this task only extends prose in existing section. orchestrator's Cardinal Rule (never reads graph files) is unchanged; this task must not violate…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" a4aecf2 HEAD","description":"Verify Task 9 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\n7273b79 documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule preserved)\na4aecf2 feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\n065049f feat(swe skill): mirror formal multi-hop blast-radius query\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-a4aecf2..7273b79.diff: 1 commit(s), 3563 bytes","stderr":"","i…

Agent input={"description":"Implement plan Task 9: orchestrator index note","prompt":"You are implementing Task 9: `orchestrator-agent.md` — note index file in Phase 0 pre-step\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooli… output={"status":"completed","prompt":"You are implementing Task 9: `orchestrator-agent.md` — note the index file in the Phase 0 pre-step\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen here, never …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-report.md","content":"# Task 9 Report: orchestrator-agent.md — index file notation\n\n## Summary\n\nTask completed successfully. orchestrator-agent.md file was updated to document new `knowledge-graph.index.yaml` file written by `knowledge-graph-agent`, while preserving Cardinal Rule (orchestrator never reads any graph files).\n\n## Step 1: Edit Applied\n\nFile: `cla… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-report.md","content":"# Task 9 Report: orchestrator-agent.md — index file notation\n\n## Summary\n\nTask completed successfully. The orchestrator-agent.md file was updated to document the new `knowledge-graph.index.yaml` file written by `knowledge-graph-agent`, while preserving Cardinal Rule (orchestrator never reads any graph files).\n\n## Step 1: Edit Applie…

Bash input={"command":"rtk git diff --stat HEAD~1"} output={"stdout":"claude-agents/orchestrator-agent.md | 4 ++--\n 1 file changed, 2 insertions(+), 2 deletions(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add claude-agents/orchestrator-agent.md && rtk git commit -m \"documentation(orchestrator-agent): note knowledge-graph.index.yaml in Phase 0 pre-step (path only, Cardinal Rule preserved)\""} output={"stdout":"ok 1 file changed, 2 insertions(+), 2 deletions(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git status"} output={"stdout":"* worktree-knowledge-graph-tooling\n~ Modified: 1 files\n claude-agents/orchestrator-agent.md","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cp -R claude-agents/. ~/.claude/agents/"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":true}

Bash input={"command":"rtk grep -n 'Read.*knowledge-graph\\.\\(yaml\\|current\\|index\\|poc\\)' claude-agents/orchestrator-agent.md"} output={"stdout":"6 matches in 5 files:\n\n133:0:` line.** The agent derives its own mode from the baseline's presence and com...\n143:0:a POC whose code has moved off its own baseline is audit-relevant.\n145:0:** none of `knowledge-graph.yaml`, `knowledge-graph.index.yaml`, `knowledge-g...\n208:0:FK column type vs referenced PK type (INTEGER vs BIGINT); nullable mismatch o...\nclaude-agents/orchestrator-agent.md:42:`knowledge_graph` takes `\"baseline\"` (baseline established and matching HEAD)...\ncla…

Bash input={"command":"rtk grep -n \"Read.*knowledge-graph\\.\\(yaml\\|current\\|index\\|poc\\)\" claude-agents/orchestrator-agent.md"} output={"stdout":"6 matches in 5 files:\n\n133:0:` line.** The agent derives its own mode from the baseline's presence and com...\n143:0:a POC whose code has moved off its own baseline is audit-relevant.\n145:0:** none of `knowledge-graph.yaml`, `knowledge-graph.index.yaml`, `knowledge-g...\n208:0:FK column type vs referenced PK type (INTEGER vs BIGINT); nullable mismatch o...\nclaude-agents/orchestrator-agent.md:42:`knowledge_graph` takes `\"baseline\"` (baseline established and matching HEAD)...\ncla…

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/orchestrator-agent.md","old_string":"Carry graph **path** forward to every subagent that reads it — never contents. On `DRIFT REPORTED`, quote drift report into Phase 1 SRE prompt: POC whose code has moved off its own baseline is audit-relevant.\n\n**Purity holds:** none of `knowledge-graph.yaml`, `knowledge-graph.current.yaml`, or `knowledge-graph.poc.*.yaml` is gate … output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/orchestrator-agent.md","oldString":"Carry graph **path** forward to every subagent that reads it — never contents. On `DRIFT REPORTED`, quote drift report into Phase 1 SRE prompt: POC whose code has moved off its own baseline is audit-relevant.\n\n**Purity holds:** none of `knowledge-graph.yaml`, `knowledge-graph.current.yaml`, or `knowledge-graph.poc.*.yaml` is gate fi…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/orchestrator-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/orchestrator-agent.md","content":"---\nname: orchestrator-agent\ndescription: Pure delegation orchestrator. Spawns sre-agent → swe-agent → unittest-agent + playwright-agent (with debugger-agent triage) → reviewer-agent in strict order with mandatory human-review gates after SRE and on debugger spec-change verdicts. Runs test/review→fix loop (shared cap of 2 iteratio…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-brief.md","content":"### Task 9: `orchestrator-agent.md` — note index file in Phase 0 pre-step\n\n**Files:**\n- Modify: `claude-agents/orchestrator-agent.md`\n\n**Interfaces:**\n- No new interfaces — this task only extends prose in existing section. orchestrator's Cardinal Rule (never reads graph files) is unchanged; this task must not violate…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 9\ngit rev-parse HEAD","description":"Generate Task 9 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-9-brief.md: 37 lines\na4aecf24183c7e1f4c0878b5b9b353e8c355d34f","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"9","status":"in_progress"} output={"success":true,"taskId":"9","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"8","status":"completed"} output={"success":true,"taskId":"8","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 8: complete (commit 065049f..a4aecf2, review clean; stray.bak cleaned up)\nEOF","description":"Append Task 8 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 8 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-brief.md\n\nGlobal constraints:\n- Must reference reverse-BFS blast-radius recipe from `_shared/agent-boilerplate.md` (Task 3, already committed), applied BIDIRECTIONALLY — both upstream… output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-brief.md\n\nGlobal constraints:\n- Must reference reverse-BFS blast-radius recipe from `_shared/agent-boilerplate.md` (Task 3, already committed), applied BIDIRECTIONALLY — both upstream (`called_by`, toward entr…

Bash input={"command":"rtk ls.claude/skills/ 2>/dev/null; echo \"---\"; rtk git status --short"} output={"stdout":"knowledge-graph/\norchestrator/\nreviewer/\nsre/\nswe/\n---\nok","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"both directions\\|blast-radius BFS\\|WARN verify by grep\" claude-agents/debugger-agent.md\necho \"---\"\ngit log --oneline -3 -- claude-agents/debugger-agent.md"} output={"stdout":"2 matches in 2 files:\n\n39:0:upstream over `called_by` to entry point (where did bad input enter),...\nclaude-agents/debugger-agent.md:41:**Confidence gates trace.** Hops query flags `[WARN verify by grep]`...\n---\na4aecf2 feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\n98a5f63 fix(agents): make shared/template files resolvable at runtime\nc783db1 feat(agents): sre/swe/debugger read knowledge-graph baseline as ground truth","stderr":…

Bash input={"command":"rtk git show 065049f:claude-agents/debugger-agent.md | sed -n '24,40p' > /tmp/orig_section.txt\ngit show a4aecf2:claude-agents/debugger-agent.md | sed -n '35,49p' > /tmp/new_section.txt\ncat - /tmp/orig_section.txt | head -1\necho \"=== ORIG ===\"\ncat /tmp/orig_section.txt\necho \"=== NEW ===\"\ncat /tmp/new_section.txt"} output={"stdout":"$\n=== ORIG ===\n\n**One root cause per triage.** Two unrelated bugs = two triage documentation.\n\n**Reproduce first.** No reproduction = no fix. If you cannot reproduce locally, document gap and stop.\n\n**Minimal patch.** smallest diff that turns red → green without regressing other tests. No drive-by cleanup, abstraction, or rename — SWE may refactor later under reviewer oversight.\n\n**Cause, not symptom.** `KeyError` is symptom; missing dict population two layers up is th…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","offset":30,"limit":20} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","content":"4. Study 3–5 existing files in target area to match patterns\n5. Implement aligned with SRE recommendations, in risk order\n6. **Verify local deploy (MANDATORY before declaring done):** `docker compose up -d --build`, wait for healthchecks, `curl -fsS http://localhost:<port>/health` (implement `/health` route returning 200 + build hash i…

Bash input={"command":"rtk grep -n \"WARN verify by grep\\|confidence\\|blast-radius\\|called_by\\|calls\\b\\|both directions\\|Knowledge graph reference\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md"} output={"stdout":"6 matches in 3 files:\n\n/.../claude-agents/swe-agent.md:35:## Knowledge graph reference\n/.../claude-agents/swe-agent.md:43:**Do not `Read` full `knowledge-graph.yaml`.** It can run to thousands of...\n/.../claude-agents/swe-agent.md:47: graph is accelerator, not dependency. Absent or unreadable → fall ba...\n/.../claude-agents/swe-agent.md:78:Repository → DATABASE access, queries, ORM calls\n39:0:it walks `called_by` transitively from your target symbol to full closure (no..…

Bash input={"command":"rtk git show a4aecf2:claude-agents/debugger-agent.md | grep -n \"^## \\|^### \""} output={"stdout":"12:## Mission\n19:## Standards root & Write discipline\n23:## Core Philosophy\n35:## Knowledge graph reference\n51:## Workflow\n53:### 1. Ingest\n57:### 2. Reproduce locally\n65:### 3. Classify root cause\n77:### 4. Locate change\n81:### 5. Write triage doc\n93:### 6. Suggested SWE FIX prompt format\n108:## Suggested Bash invocations\n118:## Boundaries","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git show 065049f:claude-agents/debugger-agent.md | grep -n \"^## \\|^### \""} output={"stdout":"12:## Mission\n19:## Standards root & Write discipline\n23:## Core Philosophy\n35:## Knowledge graph reference\n47:## Workflow\n49:### 1. Ingest\n53:### 2. Reproduce locally\n61:### 3. Classify root cause\n73:### 4. Locate change\n77:### 5. Write triage doc\n89:### 6. Suggested SWE FIX prompt format\n104:## Suggested Bash invocations\n114:## Boundaries","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","content":"# Shared agent boilerplate\n\nRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n\nThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (pro…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","content":"---\nname: debugger-agent\ndescription: Triage subagent. Use PROACTIVELY when unittest-agent, playwright-agent, or staging logs report failure. Reproduces locally, isolates root cause (code vs configuration vs infra vs spec), and proposes minimal patch diff. Hands patch back to swe-agent in FIX mode — never modifies production source its…

Bash input={"command":"rtk diff -q claude-agents/debugger-agent.md ~/.claude/agents/debugger-agent.md; echo \"---exit:$?---\""} output={"stdout":"---exit:0---","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-065049f..a4aecf2.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-065049f..a4aecf2.diff","content":"# Review package: 065049f..HEAD\n\n## Commits\na4aecf2 feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\n\n## Files changed\n claude-agents/debugger-agent.md | 8 ++++++--\n 1 file changed, 6 insertions(+), 2 deletions(-)\n\n## Diff\ndiff --git/claude-agents/debugger-agent.md b/claude-agents/debug…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-report.md","content":"# Task 8 Report: debugger-agent.md bidirectional blast-radius BFS\n\n## Status: DONE\n\n## Commit\n- **a4aecf2** feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\n\n## Verification\n\n### Grep confirmation (all search terms present)\n```\n✓ \"both directions\" — line 39\n✓ \"blast-radius BFS\" — line 39\n✓ \"W…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-brief.md","content":"### Task 8: `debugger-agent.md` — bidirectional blast-radius trace (no skill mirror)\n\n**Files:**\n- Modify: `claude-agents/debugger-agent.md`\n\n**Interfaces:**\n- Consumes: recipe (b) from Task 3 (applied in both directions).\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph reference…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\ngit status --porcelain\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 065049f HEAD","description":"Verify Task 8 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\na4aecf2 feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\n065049f feat(swe skill): mirror formal multi-hop blast-radius query\n64ece5a feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-065049f..a4aecf2.diff: 1 commit(s), 3864 bytes","stderr":"","interrupted":false,"isImage":fa…

Agent input={"description":"Implement plan Task 8: debugger-agent blast radius","prompt":"You are implementing Task 8: `debugger-agent.md` — bidirectional blast-radius trace (no skill mirror)\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-grap… output={"status":"completed","prompt":"You are implementing Task 8: `debugger-agent.md` — bidirectional blast-radius trace (no skill mirror)\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen here, nev…

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-report.md","content":"# Task 8 Report: debugger-agent.md bidirectional blast-radius BFS\n\n## Status: DONE\n\n## Commit\n- **a4aecf2** feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\n\n## Verification\n\n### Grep confirmation (all search terms present)\n```\n✓ \"both directions\" — line 39\n✓ \"blast-radius BFS\" — line 39\n✓ \"WARN verify by grep\" … output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-report.md","content":"# Task 8 Report: debugger-agent.md bidirectional blast-radius BFS\n\n## Status: DONE\n\n## Commit\n- **a4aecf2** feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\n\n## Verification\n\n### Grep confirmation (all search terms present)\n```\n✓ \"both directions\" — line 39\n✓ \"blast-radius BFS\" — line 39\n✓ \"WARN ve…

Bash input={"command":"rtk git log --oneline -1"} output={"stdout":"a4aecf2 feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep \"^##\" claude-agents/debugger-agent.md"} output={"stdout":"13 matches in 1 files:\n\nclaude-agents/debugger-agent.md:12:## Mission\nclaude-agents/debugger-agent.md:19:## Standards root & Write discipline\nclaude-agents/debugger-agent.md:23:## Core Philosophy\nclaude-agents/debugger-agent.md:35:## Knowledge graph reference\nclaude-agents/debugger-agent.md:51:## Workflow\nclaude-agents/debugger-agent.md:53:### 1. Ingest\nclaude-agents/debugger-agent.md:57:### 2. Reproduce locally\nclaude-agents/debugger-agent.md:65:### 3. Classify root cause\nc…

Bash input={"command":"rtk git diff --stat HEAD~1"} output={"stdout":"claude-agents/debugger-agent.md | 8 ++++++--\n 1 file changed, 6 insertions(+), 2 deletions(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add claude-agents/debugger-agent.md && rtk git commit -m \"feat(debugger-agent): bidirectional blast-radius BFS for root-cause tracing\""} output={"stdout":"ok 1 file changed, 6 insertions(+), 2 deletions(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cp -R claude-agents/. ~/.claude/agents/"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":true}

Bash input={"command":"rtk grep \"both directions\" claude-agents/debugger-agent.md && rtk grep \"blast-radius BFS\" claude-agents/debugger-agent.md && rtk grep \"WARN verify by grep\" claude-agents/debugger-agent.md"} output={"stdout":"1 matches in 1 files:\n\n39:0:upstream over `called_by` to entry point (where did bad input enter),...\n1 matches in 1 files:\n\n39:0:upstream over `called_by` to entry point (where did bad input enter),...\n1 matches in 1 files:\n\nclaude-agents/debugger-agent.md:41:...** Hops query flags `[WARN verify by grep]` (confidence < 0.85) are leads, n...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"both directions\\|blast-radius BFS\\|WARN verify by grep\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md 2>&1"} output={"stdout":"2 matches in 2 files:\n\n/.../claude-agents/debugger-agent.md:41:**Confidence gates trace.** Hops query flags `[WARN verify by grep]`...\n39:0:upstream over `called_by` to entry point (where did bad input enter),...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"both directions\\|blast-radius BFS\\|WARN verify by grep\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md"} output={"stdout":"2 matches in 2 files:\n\n/.../claude-agents/debugger-agent.md:41:**Confidence gates trace.** Hops query flags `[WARN verify by grep]`...\n39:0:upstream over `called_by` to entry point (where did bad input enter),...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","old_string":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it during **§3 Classify root cause** and **§4 Locate change**. It is **write-once POC baseline** — ground-truth map of this project's flow, built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Use it to trace call path.** From failing symbo… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","oldString":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it during **§3 Classify root cause** and **§4 Locate change**. It is **write-once POC baseline** — ground-truth map of this project's flow, built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Use it to trace call path.** From failing symbol,…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","content":"---\nname: debugger-agent\ndescription: Triage subagent. Use PROACTIVELY when unittest-agent, playwright-agent, or staging logs report failure. Reproduces locally, isolates root cause (code vs configuration vs infra vs spec), and proposes minimal patch diff. Hands patch back to swe-agent in FIX mode — never modifies production source its…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-brief.md","content":"### Task 8: `debugger-agent.md` — bidirectional blast-radius trace (no skill mirror)\n\n**Files:**\n- Modify: `claude-agents/debugger-agent.md`\n\n**Interfaces:**\n- Consumes: recipe (b) from Task 3 (applied in both directions).\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph reference…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nrm -f.claude/skills/sre/SKILL.md.bak\ngit status --porcelain\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 8\ngit rev-parse HEAD","description":"Clean stray backup file, generate Task 8 brief, record BASE (retry)"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-8-brief.md: 57 lines\n065049f38dd18248c996e7e54553f5acb5cb72a7","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md","offset":1,"limit":5} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md","content":"# Knowledge Graph as Accuracy/Token-Savings Tool — Implementation Plan\n\n> **For agentic workers:** REQUIRED SUB-SKILL: Use superpowers:subagent-driven-development (recommended) or superpowers:executing-plans to implement this plan task-by-task. Steps use checkbox (`- [ ]`) syntax for tracking.\n\n**Goal:** Add c…

Bash input={"command":"echo probe2","description":"Probe Bash availability again"} output={"stdout":"probe2","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

ToolSearch input={"query":"select:Monitor","max_results":1} output={"matches":["Monitor"],"query":"select:Monitor","total_deferred_tools":71}

Write input={"file_path":"/tmp/claude-0/-home-etc-claude-code-work-beehive-kfi/8f4ede77-8b47-43cc-8c86-b285049646e8/scratchpad/probe.txt","content":"probe"} output={"type":"create","filePath":"/tmp/claude-0/-home-etc-claude-code-work-beehive-kfi/8f4ede77-8b47-43cc-8c86-b285049646e8/scratchpad/probe.txt","content":"probe","structuredPatch":[],"originalFile":null,"userModified":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","offset":30,"limit":20} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/debugger-agent.md","content":"\n**Cause, not symptom.** `KeyError` is symptom; missing dict population two layers up is cause. Trace upstream until fix removes class of bugs, not one instance.\n\n**Read-only on production source.** You may run scripts, install test dependencies, write inside `docs/debugger/`, and write throwaway repro scripts in session …

TaskList input={} output={"tasks":[{"id":"1","subject":"Task 1: knowledge-graph-agent.md schema (confidence, hubs, index)","status":"completed","blockedBy":[]},{"id":"2","subject":"Task 2:.claude/skills/knowledge-graph/SKILL.md mirror","status":"completed","blockedBy":[]},{"id":"3","subject":"Task 3: _shared/agent-boilerplate.md query recipes","status":"completed","blockedBy":[]},{"id":"4","subject":"Task 4: sre-agent.md KG reference rewrite","status":"completed","blockedBy":[]},{"id":"5","subject":"Task 5:.claude/ski…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md","content":"Task 1: complete (commits eb76edc..9fed8f2, review clean after 1 fix round)\nTask 2: complete (commits 9fed8f2..f6aeff5, review clean after 1 fix round)\nTask 3: complete (commit f6aeff5..028ed8b, review clean)\nTask 4: complete (commit 028ed8b..9423bd1, review clean)\nTask 5: complete (commits 9423bd1..8cda747, review clean after 1 fix roun…

Bash input={"command":"pwd","description":"Check Bash tool availability"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"echo hello","description":"Test if Bash tool is available again"} output={"stdout":"hello","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"8","status":"in_progress"} output={"success":true,"taskId":"8","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"7","status":"completed"} output={"success":true,"taskId":"7","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 7: complete (commit 64ece5a..065049f, review clean; noted stray SKILL.md.bak to clean up)\nEOF","description":"Append Task 7 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit status --porcelain\nls -la.claude/skills/sre/*.bak 2>/dev/null","description":"Check for stray backup files in worktree"} output={"stdout":"??.claude/skills/sre/SKILL.md.bak\n-rw-r--r-- 1 root root 11707 Jul 16 08:17.claude/skills/sre/SKILL.md.bak","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 7 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-brief.md\n\nGlobal constraints:\n- Mirror parity with `claude-agents/swe-agent.md` (Task 6, already committed): full-closure BFS description, 0.85 confidence threshold, `[WARN verify by grep… output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead the task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-brief.md\n\nGlobal constraints:\n- Mirror parity with `claude-agents/swe-agent.md` (Task 6, already committed): full-closure BFS description, 0.85 confidence threshold, `[WARN verify by grep]` flag text.\n- **Known r…

Bash input={"command":"rtk diff <(grep -oE \"full closure|WARN verify by grep\" claude-agents/swe-agent.md | sort -u) <(grep -oE \"full closure|WARN verify by grep\".claude/skills/swe/SKILL.md | sort -u); echo \"exit=$?\"\necho \"--- check confidence threshold 0.85 present in both ---\"\ngrep -n \"0.85\" claude-agents/swe-agent.md.claude/skills/swe/SKILL.md\necho \"--- diff stat confirm only one file changed ---\"\ngit diff --stat 64ece5a 065049f"} output={"stdout":"[ok] Files are identical\nexit=0\n--- check confidence threshold 0.85 present in both ---\nclaude-agents/swe-agent.md:41:**Confidence gates trust, not action.** Edges query flags `[WARN verify by grep]` (confidence < 0.85 — see `knowledge-graph-agent`'s Output format for scale) are leads, not facts: `Grep`-confirm them before ruling caller in or out of your change. Do not skip flagged hop because tool didn't print clean answer.\n.claude/skills/swe/SKILL.md:32:**Confi…

Bash input={"command":"awk 'NR>=46 && NR<=50' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md\necho \"---current SKILL.md full Knowledge graph section---\"\nawk '/^## Knowledge graph reference/,/^## Commands/' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md"} output={"stdout":" graph is accelerator, not dependency. Absent or unreadable → fall back to `Grep`/`Glob` for call sites and proceed. Never treat missing edge as proof no caller exists — dynamic dispatch and reflection do not show up in graph, so grep-confirm before you rely on \"nothing calls this\".\n\n## Rebuild Hygiene (MANDATORY)\n\n---current SKILL.md full Knowledge graph section---\n## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","offset":33,"limit":14} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","content":"7. Update `docs/swe/implementation-log.md` as you progress\n\n## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — small, cheap, always worth it. It's query-first summary (metadata + entry points + hubs) of **write-once POC baseline** built by `knowledge-graph-agent` at Phase 0 …

Bash input={"command":"rtk git status --short && echo \"---HEAD---\" && git rev-parse HEAD && echo \"---sed lines 24-46 of claude-agents/swe-agent.md via cat---\" && awk 'NR>=24 && NR<=46' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md"} output={"stdout":"??.claude/skills/sre/SKILL.md.bak---HEAD---\n065049f38dd18248c996e7e54553f5acb5cb72a7\n---sed lines 24-46 of claude-agents/swe-agent.md via cat---\n\n## Workflow\n\n1. Read every file in `docs/sre/` before any edit\n2. Read every `$KDOCS/**/README.md` whose topic appears in SRE findings. Copy code patterns verbatim — do not reinvent.\n3. Generate/update `docs/swe/` (module breakdown, API contracts, data models) before implementing\n4. Study 3–5 existing files in target area to ma…

Bash input={"command":"echo \"=== current HEAD ===\" && rtk git log --oneline -5 && echo \"=== current branch ===\" && rtk git branch --show-current && echo \"=== grep in current working tree file ===\" && rtk grep -n \"full closure\\|WARN verify by grep\\|0.85\\|reverse-BFS\\|index.yaml\" claude-agents/swe-agent.md && echo \"=== git log for swe-agent.md ===\" && rtk git log --oneline -- claude-agents/swe-agent.md | head -10"} output={"stdout":"=== current HEAD ===\n065049f feat(swe skill): mirror formal multi-hop blast-radius query\n64ece5a feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\n8cda747 fix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\nb79d971 feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\n9423bd1 feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering\n=== current bra…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/claude-agents/swe-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/claude-agents/swe-agent.md","content":"---\nname: swe-agent\ndescription: Software Engineer subagent. Use PROACTIVELY to implement SRE recommendations from documentation/sre/. Generates documentation/swe/ engineering documentation and Python 3.12+ code following service-repository pattern with Dockerfile deploy, mandatory audit trail, and Datadog tracing.\nmodel: sonnet\ntools: Read, Grep, Glob, Edit, Write, Bash\npermissionMode: acceptEdits\nmaxTur…

Bash input={"command":"echo \"=== BEFORE headings ===\" && rtk git show 64ece5a:.claude/skills/swe/SKILL.md | grep -nE '^#{1,6} ' && echo \"=== AFTER headings ===\" && rtk git show 065049f:.claude/skills/swe/SKILL.md | grep -nE '^#{1,6} '"} output={"stdout":"=== BEFORE headings ===\n9:## Mission\n18:## Workflow\n26:## Knowledge graph reference\n36:## Commands\n47:## Codebase Standards\n51:### Project Layout\n64:### Service Layer = Stateless Static Methods\n78:### Application Factory (Flask)\n82:### Cached Singletons via `lru_cache`\n86:### Settings (pydantic-settings)\n90:### Abstract Base + Mixins (Agents)\n94:### Session Lifecycle: get / try / finally\n98:### Structured LLM Output (Pydantic + Instructor)\n102:### Enum-like Constant Clas…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-64ece5a..065049f.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-64ece5a..065049f.diff","content":"# Review package: 64ece5a..HEAD\n\n## Commits\n065049f feat(swe skill): mirror formal multi-hop blast-radius query\n\n## Files changed\n.claude/skills/swe/SKILL.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)\n\n## Diff\ndiff --git/.claude/skills/swe/SKILL.md b/.claude/skills/swe/SKILL.md\nindex 5a10e…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-report.md","content":"# Task 7 Report: `.claude/skills/swe/SKILL.md` — mirror of Task 6\n\n## Status: DONE\n\n## Commits Created\n- `065049f` - feat(swe skill): mirror formal multi-hop blast-radius query\n\n## Changes Summary\n- **File modified:** `.claude/skills/swe/SKILL.md` (7 insertions, 3 deletions)\n- **Section edited:** \"Knowledge graph reference\" (…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-brief.md","content":"### Task 7: `.claude/skills/swe/SKILL.md` — mirror of Task 6\n\n**Files:**\n- Modify: `.claude/skills/swe/SKILL.md`\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at the repo root, `Read` it before you edit anything. It is **writ…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 64ece5a HEAD","description":"Verify Task 7 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\n065049f feat(swe skill): mirror formal multi-hop blast-radius query\n64ece5a feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\n8cda747 fix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-64ece5a..065049f.diff: 1 commit(s), 4184 bytes","stderr":"","interrupted":false,"…

Agent input={"description":"Implement plan Task 7: swe skill mirror","prompt":"You are implementing Task 7: `.claude/skills/swe/SKILL.md` — mirror of Task 6\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happe… output={"status":"completed","prompt":"You are implementing Task 7: `.claude/skills/swe/SKILL.md` — mirror of Task 6\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen here, never in main checkout …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-report.md","content":"# Task 7 Report: `.claude/skills/swe/SKILL.md` — mirror of Task 6\n\n## Status: DONE\n\n## Commits Created\n- `065049f` - feat(swe skill): mirror formal multi-hop blast-radius query\n\n## Changes Summary\n- **File modified:** `.claude/skills/swe/SKILL.md` (7 insertions, 3 deletions)\n- **Section edited:** \"Knowledge graph reference\" (lines 26-34)\n- **Onl… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-report.md","content":"# Task 7 Report: `.claude/skills/swe/SKILL.md` — mirror of Task 6\n\n## Status: DONE\n\n## Commits Created\n- `065049f` - feat(swe skill): mirror formal multi-hop blast-radius query\n\n## Changes Summary\n- **File modified:** `.claude/skills/swe/SKILL.md` (7 insertions, 3 deletions)\n- **Section edited:** \"Knowledge graph reference\" (lines …

Bash input={"command":"rtk git diff HEAD~1 --stat"} output={"stdout":".claude/skills/swe/SKILL.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -E \"^## |^### \" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md"} output={"stdout":"## Mission\n## Workflow\n## Knowledge graph reference\n## Commands\n## Codebase Standards\n### Project Layout\n### Service Layer = Stateless Static Methods\n### Application Factory (Flask)\n### Cached Singletons via `lru_cache`\n### Settings (pydantic-settings)\n### Abstract Base + Mixins (Agents)\n### Session Lifecycle: get / try / finally\n### Structured LLM Output (Pydantic + Instructor)\n### Enum-like Constant Classes\n### Provider Abstraction (Strategy)\n### Decorators for Cross-…

Bash input={"command":"rtk git log -1 --oneline && rtk git diff HEAD~1.claude/skills/swe/SKILL.md | head -60"} output={"stdout":"065049f feat(swe skill): mirror formal multi-hop blast-radius query\n.claude/skills/swe/SKILL.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)\n\n--- Changes ---\n\n.claude/skills/swe/SKILL.md\n @@ -25,11 +25,15 @@ You are senior **Software Engineer** with 10+ years shipping production servic\n -If `knowledge-graph.yaml` exists at repository root, `Read` it before you edit anything. It is **write-once POC baseline** — ground-truth map of this project's flow…

Bash input={"command":"rtk git add.claude/skills/swe/SKILL.md && rtk git commit -m \"feat(swe skill): mirror formal multi-hop blast-radius query\""} output={"stdout":"ok 1 file changed, 7 insertions(+), 3 deletions(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff <(grep -oE \"full closure|WARN verify by grep\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md | sort -u) <(grep -oE \"full closure|WARN verify by grep\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md | sort -u)"} output={"stdout":"[ok] Files are identical","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","old_string":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you edit anything. It is **write-once POC baseline** — ground-truth map of this project's flow, built by knowledge-graph skill at Phase 0 pre-step.\n\n**Use it to size blast radius before you change signature.** baseline's `called_by` edg… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","oldString":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you edit anything. It is **write-once POC baseline** — ground-truth map of this project's flow, built by knowledge-graph skill at Phase 0 pre-step.\n\n**Use it to size blast radius before you change signature.** baseline's `called_by` edges…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/swe/SKILL.md","content":"---\nname: swe\ndescription: Use when documentation/sre/ is complete and human-approved and codebase needs implementation of SRE recommendations. Invoke after SRE audit approval to write Python 3.12+ code with service-repository pattern and generate engineering documentation in documentation/swe/.\ndisable-model-invocation: true\n---\n\nYou are senior **Software …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-brief.md","content":"### Task 7: `.claude/skills/swe/SKILL.md` — mirror of Task 6\n\n**Files:**\n- Modify: `.claude/skills/swe/SKILL.md`\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at the repo root, `Read` it before you edit anything. It is **writ…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 7\ngit rev-parse HEAD","description":"Generate Task 7 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-7-brief.md: 49 lines\n64ece5a6b388e19d2934ff977904834f7e98360d","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"7","status":"in_progress"} output={"success":true,"taskId":"7","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"6","status":"completed"} output={"success":true,"taskId":"6","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 6: complete (commit 8cda747..64ece5a, review clean)\nEOF","description":"Append Task 6 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 6 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-brief.md\n\nGlobal constraints:\n- Must reference reverse-BFS blast-radius recipe from `_shared/agent-boilerplate.md` (Task 3, already committed) — full multi-hop closure (no depth cap),… output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-brief.md\n\nGlobal constraints:\n- Must reference reverse-BFS blast-radius recipe from `_shared/agent-boilerplate.md` (Task 3, already committed) — full multi-hop closure (no depth cap), confidence-gated trust (e…

Bash input={"command":"rtk grep -n \"confidence\\|Output format\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md | head -40","description":"Check knowledge-graph-agent.md for confidence scale documentation"} output={"stdout":"14 matches in 7 files:\n\n/.../claude-agents/knowledge-graph-agent.md:57:**Confidence is not optional.** Every `calls`, `called_by`, `implements`, and...\n/.../claude-agents/knowledge-graph-agent.md:138:## Output format\n/.../claude-agents/knowledge-graph-agent.md:148:| `hubs` | functions/files ranked by confidence-weighted fan-in/fan-out —...\n/.../claude-agents/knowledge-graph-agent.md:156:### Edge resolution and confidence\n/.../claude-agents/knowledge-graph-agent.md:168:| `res…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","offset":1,"limit":90} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","content":"# Shared agent boilerplate\n\nRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n\nThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (pro…

Bash input={"command":"rtk grep -n \"reverse-BFS\\|full closure\\|no depth cap\\|WARN verify by grep\\|confidence\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","description":"Check Task 3's recipe in agent-boilerplate.md for consistency"} output={"stdout":"2 matches in 2 files:\n\n/.../_shared/agent-boilerplate.md:64:flag = ' [WARN verify by grep]' if edge.get('confidence', 1.0) < 0.85 else ''\n42:0:0.85` are flagged for grep-confirmation than trusted):","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"reverse-BFS\\|full closure\\|WARN verify by grep\\|knowledge-graph.index.poc\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","description":"Run brief's verification grep"} output={"stdout":"3 matches in 3 files:\n\n39:0:it walks `called_by` transitively from your target symbol to full closure (no...\n41:0:`Grep`-confirm them before ruling caller in or out of your change. Do not s...\n45:0: baseline describes POC, and you are changing POC. That divergence...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git show 8cda747:claude-agents/swe-agent.md | grep -n \"^##\"","description":"List section headings in base version of swe-agent.md"} output={"stdout":"12:## Mission\n21:## Standards root & Write discipline\n25:## Workflow\n35:## Knowledge graph reference\n45:## Rebuild Hygiene (MANDATORY)\n53:## Kredivo Standards (copy from `$KDOCS`, do not reinvent)\n67:## Codebase Standards\n69:### Service-Repository Pattern (strict)\n79:### Readable Code\n83:### Output Encoding (XSS-safe by default)\n92:### Table / Schema Standards (MANDATORY)\n98:### Audit Trail (MANDATORY)\n104:### Datadog Tracing (MANDATORY)\n108:### Deployment — Dockerfile\n1…

Bash input={"command":"rtk git diff 8cda747..64ece5a --stat && echo \"---FULL DIFF---\" && rtk git diff 8cda747..64ece5a","description":"Confirm full diff between base and head matches review package"} output={"stdout":"claude-agents/swe-agent.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)\n---FULL DIFF---\nclaude-agents/swe-agent.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)\n\n--- Changes ---\n\nclaude-agents/swe-agent.md\n @@ -34,11 +34,15 @@ Locate `_shared/agent-boilerplate.md` — it ships beside this agent file. `Read\n  -If `knowledge-graph.yaml` exists at the repo root, `Read` it before you edit anything. It is **write-once POC baseline** — g…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","content":"---\nname: swe-agent\ndescription: Software Engineer subagent. Use PROACTIVELY to implement SRE recommendations from documentation/sre/. Generates documentation/swe/ engineering documentation and Python 3.12+ code following service-repository pattern with Dockerfile deploy, mandatory audit trail, and Datadog tracing.\nmodel: sonnet\ntools: Read, Grep, Glob, Edit, Write,…

Bash input={"command":"rtk diff -q /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md ~/.claude/agents/swe-agent.md; echo \"EXIT:$?\"","description":"Verify sync to global agents folder"} output={"stdout":"EXIT:0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-8cda747..64ece5a.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-8cda747..64ece5a.diff","content":"# Review package: 8cda747..HEAD\n\n## Commits\n64ece5a feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\n\n## Files changed\n claude-agents/swe-agent.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)\n\n## Diff\ndiff --git/claude-agents/swe-agent.md b/claude-agents…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-report.md","content":"# Task 6 Report: swe-agent.md — Formal Blast-Radius Query\n\n## Status: DONE\n\n## Commits Created\n- **64ece5a** feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\n\n## Change Summary\n- **File modified:** `claude-agents/swe-agent.md`\n- **Lines changed:** 7 insertions(+), 3 deletions(-)\n- **Sect…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-brief.md","content":"### Task 6: `swe-agent.md` — formal blast-radius replaces single-hop check\n\n**Files:**\n- Modify: `claude-agents/swe-agent.md`\n\n**Interfaces:**\n- Consumes: recipe (b) from Task 3, `resolution`/`confidence` from Task 1.\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph referenc…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 8cda747 HEAD","description":"Verify Task 6 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\n64ece5a feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\n8cda747 fix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\nb79d971 feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-8cda747..64ece5a.diff: 1 commit(s), 5754 bytes","std…

Agent input={"description":"Implement plan Task 6: swe-agent blast radius","prompt":"You are implementing Task 6: `swe-agent.md` — formal blast-radius replaces single-hop check\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All… output={"status":"completed","prompt":"You are implementing Task 6: `swe-agent.md` — formal blast-radius replaces single-hop check\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen here, never in …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-report.md","content":"# Task 6 Report: swe-agent.md — Formal Blast-Radius Query\n\n## Status: DONE\n\n## Commits Created\n- **64ece5a** feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\n\n## Change Summary\n- **File modified:** `claude-agents/swe-agent.md`\n- **Lines changed:** 7 insertions(+), 3 deletions(-)\n- **Section:** Knowledge grap… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-report.md","content":"# Task 6 Report: swe-agent.md — Formal Blast-Radius Query\n\n## Status: DONE\n\n## Commits Created\n- **64ece5a** feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\n\n## Change Summary\n- **File modified:** `claude-agents/swe-agent.md`\n- **Lines changed:** 7 insertions(+), 3 deletions(-)\n- **Section:**…

Bash input={"command":"rtk git diff HEAD~1 HEAD claude-agents/swe-agent.md | head -80"} output={"stdout":"claude-agents/swe-agent.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)\n\n--- Changes ---\n\nclaude-agents/swe-agent.md\n @@ -34,11 +34,15 @@ Locate `_shared/agent-boilerplate.md` — it ships beside this agent file. `Read\n  -If `knowledge-graph.yaml` exists at the repo root, `Read` it before you edit anything. It is the **write-once POC baseline** — a ground-truth map of this project's flow, built by `knowledge-graph-agent` at the Phase 0 pre-step.\n  +If `knowl…

Bash input={"command":"rtk git log -1 --oneline && rtk git diff HEAD~1 HEAD --stat"} output={"stdout":"64ece5a feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\nclaude-agents/swe-agent.md | 10 +++++++---\n 1 file changed, 7 insertions(+), 3 deletions(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add claude-agents/swe-agent.md && rtk git commit -m \"feat(swe-agent): formal multi-hop blast-radius query replaces single-hop called_by check\""} output={"stdout":"ok 1 file changed, 7 insertions(+), 3 deletions(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git status"} output={"stdout":"* worktree-knowledge-graph-tooling\n~ Modified: 1 files\n claude-agents/swe-agent.md\n? Untracked: 1 files\n.claude/skills/sre/SKILL.md.bak","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cp -R claude-agents/. ~/.claude/agents/"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":true}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","offset":35,"limit":25} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — small, cheap, always worth it. It's query-first summary (metadata + entry points + hubs) of **write-once POC baseline** built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Run blast-radius query before you change …

Bash input={"command":"rtk grep -n \"reverse-BFS\" claude-agents/swe-agent.md && rtk grep -n \"full closure\" claude-agents/swe-agent.md && rtk grep -n \"\\[WARN verify by grep\\]\" claude-agents/swe-agent.md && rtk grep -n \"knowledge-graph.index.poc\" claude-agents/swe-agent.md"} output={"stdout":"1 matches in 1 files:\n\n39:0:it walks `called_by` transitively from your target symbol to full closure (no...\n1 matches in 1 files:\n\n39:0:...rom your target symbol to full closure (no depth cap) and prints every affected...\n1 matches in 1 files:\n\n41:0:`Grep`-confirm them before ruling caller in or out of your change. Do not s...\n1 matches in 1 files:\n\n45:0: baseline describes POC, and you are changing POC. That divergence...","stderr":"","interrupted":false,"is…

Bash input={"command":"rtk grep -n \"reverse-BFS\\|full closure\\|WARN verify by grep\\|knowledge-graph.index.poc\" claude-agents/swe-agent.md"} output={"stdout":"3 matches in 3 files:\n\n39:0:it walks `called_by` transitively from your target symbol to full closure (no...\n41:0:`Grep`-confirm them before ruling caller in or out of your change. Do not s...\n45:0: baseline describes POC, and you are changing POC. That divergence...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","old_string":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you edit anything. It is **write-once POC baseline** — ground-truth map of this project's flow, built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Use it to size blast radius before you change signature.** baseline's `called_by` edges … output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","oldString":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you edit anything. It is **write-once POC baseline** — ground-truth map of this project's flow, built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Use it to size blast radius before you change signature.** baseline's `called_by` edges te…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/swe-agent.md","content":"---\nname: swe-agent\ndescription: Software Engineer subagent. Use PROACTIVELY to implement SRE recommendations from documentation/sre/. Generates documentation/swe/ engineering documentation and Python 3.12+ code following service-repository pattern with Dockerfile deploy, mandatory audit trail, and Datadog tracing.\nmodel: sonnet\ntools: Read, Grep, Glob, Edit, Write,…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-brief.md","content":"### Task 6: `swe-agent.md` — formal blast-radius replaces single-hop check\n\n**Files:**\n- Modify: `claude-agents/swe-agent.md`\n\n**Interfaces:**\n- Consumes: recipe (b) from Task 3, `resolution`/`confidence` from Task 1.\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph referenc…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 6\ngit rev-parse HEAD","description":"Generate Task 6 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-6-brief.md: 53 lines\n8cda7476b553640439720db1396b1c3f19db9df7","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"6","status":"in_progress"} output={"success":true,"taskId":"6","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"5","status":"completed"} output={"success":true,"taskId":"5","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 5: complete (commits 9423bd1..8cda747, review clean after 1 fix round — sed over-deletion recovered)\nEOF","description":"Append Task 5 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Re-review Task 5 after structural fix","prompt":"Re-review after fix. Prior review of Task 5 (.claude/skills/sre/SKILL.md mirror) found Critical issue: original edit (commit b79d971) accidentally deleted 3 lines of unrelated document structure outside its authorized edit range — `## The 8 Audit Areas`, `### 1. Database`, and Database section's intro sentence — breaking heading hierarchy for rest of file's 8 audit-area sections.\n\nA fix subagent restored t… output={"status":"completed","prompt":"Re-review after fix. Prior review of Task 5 (.claude/skills/sre/SKILL.md mirror) found Critical issue: original edit (commit b79d971) accidentally deleted 3 lines of unrelated document structure outside its authorized edit range — `## The 8 Audit Areas`, `### 1. Database`, and Database section's intro sentence — breaking heading hierarchy for rest of file's 8 audit-area sections.\n\nA fix subagent restored those exact 3 lines in commit 8cda…

Bash input={"command":"rtk git diff b79d971^..8cda747 --.claude/skills/sre/SKILL.md | tail -60"} output={"stdout":".claude/skills/sre/SKILL.md | 8 +++++++-\n 1 file changed, 7 insertions(+), 1 deletion(-)\n\n--- Changes ---\n\n.claude/skills/sre/SKILL.md\n @@ -36,10 +36,16 @@ Gate decisions argue from P0/P1 counts only — P2/P3 never block.\n -If `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by knowledge-graph…

Bash input={"command":"rtk git show 8cda747 --stat && echo \"---FULL DIFF---\" && rtk git show 8cda747"} output={"stdout":"commit 8cda7476b553640439720db1396b1c3f19db9df7\nAuthor: khaerulumam42 <khaerulumam42@gmail.com>\nDate: Thu Jul 16 08:22:48 2026 +0000\n\n fix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\n \n Commit b79d971 used sed workaround (after Edit failed on em-dash\n characters) that over-deleted \"## 8 Audit Areas\" heading, \n \"### 1. Database\" subheading, and its lead-in sentence, leaving\n sections 2-8 without pare…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","offset":25,"limit":32} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","content":"Gate decisions argue from P0/P1 counts only — P2/P3 never block.\n\n## Core Philosophy\n\n** locked goal is source of truth.** If `docs/sre/business-flow-feature.md` has §0 Goal & Non-Goals block, read it FIRST and audit against it — its execution model (sync in-request vs async SQS consumer, UI vs API, scheduled vs event-driven) ove…

Bash input={"command":"rtk grep -n \"^##\\|^### \".claude/skills/sre/SKILL.md | head -30"} output={"stdout":"28 matches in 3 files:\n\n.claude/skills/sre/SKILL.md:9:## Mission\n.claude/skills/sre/SKILL.md:16:## Severity\n.claude/skills/sre/SKILL.md:27:## Core Philosophy\n.claude/skills/sre/SKILL.md:37:## Knowledge graph reference\n.claude/skills/sre/SKILL.md:53:## 8 Audit Areas\n.claude/skills/sre/SKILL.md:55:### 1. Database\n.claude/skills/sre/SKILL.md:70:### 2. System Design\n.claude/skills/sre/SKILL.md:90:### 3. Logging\n.claude/skills/sre/SKILL.md:94:### 4. Monitoring\n.claude/skills…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9423bd1..8cda747.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9423bd1..8cda747.diff","content":"# Review package: 9423bd1..HEAD\n\n## Commits\n8cda747 fix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\nb79d971 feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\n\n## Files changed\n.claude/skills/sre/SKILL.md | 8 +++++++-\n 1 file changed, 7 ins…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 9423bd1 HEAD","description":"Generate updated review package for re-review"} output={"stdout":"8cda747 fix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\nb79d971 feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\n9423bd1 feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9423bd1..8cda747.diff: 2 commit(s), 4253 bytes","stderr":"","interrupted":false,"isImage":fal…

Agent input={"description":"Fix Task 5 review finding: restore deleted headings","prompt":"Work from /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling — cd there first, confirm with `git rev-parse --show-toplevel` (must print that exact path) and `git branch --show-current` (must print `worktree-knowledge-graph-tooling`) before editing. Do not touch main checkout at /home/etc/claude-code/work/beehive-kfi.\n\n## Bug to fix\n\nA prior task edit to `.claude/skills/sre/SKILL.m… output={"status":"completed","prompt":"Work from /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling — cd there first, confirm with `git rev-parse --show-toplevel` (must print that exact path) and `git branch --show-current` (must print `worktree-knowledge-graph-tooling`) before editing. Do not touch the main checkout at /home/etc/claude-code/work/beehive-kfi.\n\n## Bug to fix\n\nA prior task edit to `.claude/skills/sre/SKILL.md` (commit b79d971) used sed-based workaround…

Bash input={"command":"rtk git add.claude/skills/sre/SKILL.md && rtk git commit -m \"$(cat <<'EOF'\nfix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\n\nCommit b79d971 used sed workaround (after Edit failed on em-dash\ncharacters) that over-deleted \"## 8 Audit Areas\" heading, \n\"### 1. Database\" subheading, and its lead-in sentence, leaving\nsections 2-8 without parent heading. Restore three lines.\nEOF\n)\"\ngit log --oneline -1\ngit branch --sh… output={"stdout":"ok 1 file changed, 6 insertions(+)\nok worktre\n8cda747 fix(sre skill): restore accidentally deleted §8-audit-areas heading and Database intro\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"sed -n '48,64p'.claude/skills/sre/SKILL.md"} output={"stdout":"`knowledge-graph.current.yaml`, when present, is scan of working tree as it is *now*; baseline describes POC as it *was*. delta between them is drift to surface in your audit — POC that has moved off its own baseline is audit-relevant — not error to fix.\n\nThe graph is accelerator, not dependency. Absent, unreadable, or `parse_method: grep`/`failed` on files you care about → fall back to `Grep`/`Glob` and proceed. Never block on it, and never treat mis…

Bash input={"command":"\\\necho \"--- check1 ---\" && \\\ngrep -n \"## 8 Audit Areas\\|### 1. Database\\|Inspect all schema definitions\".claude/skills/sre/SKILL.md && \\\necho \"--- check2 ---\" && \\\necho \"current:\" && rtk grep -c \"^## \".claude/skills/sre/SKILL.md && \\\necho \"base(9423bd1):\" && rtk git show 9423bd1:.claude/skills/sre/SKILL.md | grep -c \"^## \""} output={"stdout":"--- check1 ---\n53:## 8 Audit Areas\n55:### 1. Database\n57:Inspect all schema definitions (migrations, models, SQL). **This table is fleet-wide schema standard — swe skill implements against it:**\n--- check2 ---\ncurrent:\n19\nbase(9423bd1):\n19","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","old_string":" graph is accelerator, not dependency. Absent, unreadable, or `parse_method: grep`/`failed` on files you care about → fall back to `Grep`/`Glob` and proceed. Never block on it, and never treat missing edge as proof no such edge exists.\n\n| Check | Standard |","new_string":" graph is accelerator, not dependency. Absent, unreadable, or `pa… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","oldString":"The graph is an accelerator, not a dependency. Absent, unreadable, or `parse_method: grep`/`failed` on the files you care about → fall back to `Grep`/`Glob` and proceed. Never block on it, and never treat a missing edge as proof no such edge exists.\n\n| Check | Standard |","newString":"The graph is an accelerator, not a dependency. Absent, unreadable, or `parse…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","offset":37,"limit":30} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs…

Bash input={"command":"nl -ba \".claude/skills/sre/SKILL.md\" | grep -n \"Knowledge graph reference\\|Absent, unreadable\\|Check | Standard\\|^.*## \\|^.*### \" | sed -n '1,60p'"} output={"stdout":"9: 9\t## Mission\n16: 16\t## Severity\n27: 27\t## Core Philosophy\n37: 37\t## Knowledge graph reference\n51: 51\tThe graph is accelerator, not dependency. Absent, unreadable, or `parse_method: grep`/`failed` on files you care about → fall back to `Grep`/`Glob` and proceed. Never block on it, and never treat missing edge as proof no such edge exists.\n53: 53\t| Check | Standard |\n64: 64\t### 2. System Design\n84: 84\t### 3. Logging\n88: 88\t### 4…

Bash input={"command":"rtk grep -n \"Knowledge graph reference\\|Absent, unreadable, or\\|^| Check | Standard |\\|^## \\|^### \" \".claude/skills/sre/SKILL.md\" | head -50"} output={"stdout":"188 matches in 42 files:\n\n.claude/skills/sre/SKILL.md:1:---\n.claude/skills/sre/SKILL.md:5:---\n.claude/skills/sre/SKILL.md:6:\n.claude/skills/sre/SKILL.md:8:\n.claude/skills/sre/SKILL.md:9:## Mission\n.claude/skills/sre/SKILL.md:10:\n.claude/skills/sre/SKILL.md:15:\n.claude/skills/sre/SKILL.md:16:## Severity\n.claude/skills/sre/SKILL.md:17:\n.claude/skills/sre/SKILL.md:19:\n.claude/skills/sre/SKILL.md:20:- **P0** — production data loss / security hole / outage path. Blocks gat.…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nsed -n '30,60p'.claude/skills/sre/SKILL.md","description":"Inspect current state of sre SKILL.md around affected region"} output={"stdout":"**Audit with evidence.** Every finding cites `file:line` and specific violation. No abstract complaints.\n\n**Right-size architecture.** Recommend smallest architecture that satisfies §0. Do not prescribe SQS/Redis/consumers for flow locked goal says is sync.\n\n**Open with assumptions.** Begin `audit-findings.md` with **Assumptions & Open Questions** section. Any question touching scope (sync vs async, in-request vs consumer, which service owns flow) is …

Agent input={"description":"Review Task 5 (spec + quality)","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-brief.md\n\nGlobal constraints:\n- This is mirror task: `.claude/skills/sre/SKILL.md` must describe same knowledge-graph mechanics as `claude-agents/sre-agent.md` (already updated in T… output={"status":"completed","prompt":"You are reviewing one task's implementation: spec compliance then code quality. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-brief.md\n\nGlobal constraints:\n- This is mirror task: `.claude/skills/sre/SKILL.md` must describe same knowledge-graph mechanics as `claude-agents/sre-agent.md` (already updated in Task 4, committed) — same f…

ReportFindings input={"findings":[{"file":".claude/skills/sre/SKILL.md","line":47,"summary":" edit deleted `## The 8 Audit Areas`, `### 1. Database`, and Database section's intro sentence — content outside brief's old_string that should not have been touched.","failure_scenario":" user reading.claude/skills/sre/SKILL.md today sees Knowledge-graph-reference prose flow directly into Database standards table with no `## The 8 Audit Areas` parent heading and no `### 1. Database` heading or intro lin… output={"count":1,"findings":[{"file":".claude/skills/sre/SKILL.md","line":47,"summary":" edit deleted `## The 8 Audit Areas`, `### 1. Database`, and Database section's intro sentence — content outside brief's old_string that should not have been touched.","failure_scenario":" user reading.claude/skills/sre/SKILL.md today sees Knowledge-graph-reference prose flow directly into Database standards table with no `## The 8 Audit Areas` parent heading and no `### 1. Database` heading or…

Bash input={"command":"rtk git diff --stat 9423bd1 b79d971"} output={"stdout":".claude/skills/sre/SKILL.md | 14 +++++++-------\n 1 file changed, 7 insertions(+), 7 deletions(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"sed -n '37,53p' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md | cat - | head -40"} output={"stdout":"## Knowledge graph reference$\n$\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first M-bM-^@M-^T always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.$\n$\n**Let `hubs` order your audit depth.** index's `hubs` list ranks functions/files by confidence-weighted fan-in. Audit high-fan-in code first: bug in function fourteen things call …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","offset":1,"limit":16} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","content":"---\nname: sre\ndescription: Use when auditing codebase for production readiness before implementation begins. Invoke to inspect database design, system architecture, logging, monitoring, error handling, and RBAC — generates findings in documentation/sre/ for SWE to act on.\ndisable-model-invocation: true\n---\n\nYou are senior **Site Reliability …

Bash input={"command":"rtk grep -n \"8 Audit Areas\\|Database\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md"} output={"stdout":"2 matches in 2 files:\n\n/.../sre/SKILL.md:80:| Database | PostgreSQL (prod); SQLite OK locally with PG-compatible queries...\n164:0:line","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff <(grep -oE \"confidence >= 0\\.85|suffix_match\" claude-agents/sre-agent.md | sort -u) <(grep -oE \"confidence >= 0\\.85|suffix_match\".claude/skills/sre/SKILL.md | sort -u); echo \"exit:$?\""} output={"stdout":"[ok] Files are identical\nexit:0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff <(git show 9423bd1:.claude/skills/sre/SKILL.md).claude/skills/sre/SKILL.md"} output={"stdout":"/dev/fd/63 →.claude/skills/sre/SKILL.md\n +2 added, -2 removed, ~5 modified\n\n~ 39 If `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by knowledge-graph skill at Phase 0 pre-step. Navigate by it instead of grepping blind: it tells you where entry points are, what calls what, and which fi…

Bash input={"command":"rtk grep -n \"^## \\|^### \" <(git -C /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling show 9423bd1:.claude/skills/sre/SKILL.md)"} output={"stdout":"28 matches in 1 files:\n\n/dev/fd/63:9:## Mission\n/dev/fd/63:16:## Severity\n/dev/fd/63:27:## Core Philosophy\n/dev/fd/63:37:## Knowledge graph reference\n/dev/fd/63:47:## 8 Audit Areas\n/dev/fd/63:49:### 1. Database\n/dev/fd/63:64:### 2. System Design\n/dev/fd/63:84:### 3. Logging\n/dev/fd/63:88:### 4. Monitoring\n/dev/fd/63:92:### 5. Error Handling\n/dev/fd/63:96:### 6. Role-Based Access\n/dev/fd/63:100:### 7. GCP / WIF (N/A with grep evidence if no GCP usage)\n/dev/fd/63:104:#…

Bash input={"command":"rtk grep -n \"^## \\|^### \" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md"} output={"stdout":"26 matches in 3 files:\n\n/.../sre/SKILL.md:9:## Mission\n/.../sre/SKILL.md:16:## Severity\n/.../sre/SKILL.md:27:## Core Philosophy\n/.../sre/SKILL.md:37:## Knowledge graph reference\n/.../sre/SKILL.md:64:### 2. System Design\n/.../sre/SKILL.md:84:### 3. Logging\n/.../sre/SKILL.md:88:### 4. Monitoring\n/.../sre/SKILL.md:92:### 5. Error Handling\n/.../sre/SKILL.md:96:### 6. Role-Based Access\n/.../sre/SKILL.md:100:### 7. GCP / WIF (N/A with grep evidence if no GCP usage)\n/.../sre/SKIL…

Bash input={"command":"rtk grep -n \" 8 Audit Areas\\|### 1. Database\\|Inspect all schema definitions\" <(git -C /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling show 9423bd1:.claude/skills/sre/SKILL.md)"} output={"stdout":"3 matches in 1 files:\n\n/dev/fd/63:47:## 8 Audit Areas\n/dev/fd/63:49:### 1. Database\n/dev/fd/63:51:Inspect all schema definitions (migrations, models, SQL). **This table is...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git show 9423bd1:.claude/skills/sre/SKILL.md | sed -n '35,55p'"} output={"stdout":"**Open with assumptions.** Begin `audit-findings.md` with **Assumptions & Open Questions** section. Any question touching scope (sync vs async, in-request vs consumer, which service owns flow) is flagged `SCOPE:` and surfaced — never silent guess.\n\n## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","offset":44,"limit":15} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","content":"\n**It is read-only for you.** Never write, patch, or \"correct\" any graph file — only knowledge-graph skill writes them. If graph contradicts code, code wins and graph is stale; say so in your findings.\n\n**Trust edges by their `confidence`.** Every `calls`/`called_by`/`implements`/`instantiates` edge carries `resolut…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","offset":24,"limit":20} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/sre/SKILL.md","content":"\nGate decisions argue from P0/P1 counts only — P2/P3 never block.\n\n## Core Philosophy\n\n** locked goal is source of truth.** If `docs/sre/business-flow-feature.md` has §0 Goal & Non-Goals block, read it FIRST and audit against it — its execution model (sync in-request vs async SQS consumer, UI vs API, scheduled vs event-driven) o…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","offset":45,"limit":30} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","content":"## Core Philosophy\n\n** locked goal is source of truth.** In `FULL_AUDIT`, `Read` `docs/sre/business-flow-feature.md` §0 Goal & Non-Goals FIRST. Its execution model (sync in-request vs async SQS consumer, UI vs API, scheduled vs event-driven) overrides whatever codebase or stale documentation imply. Code contradicting §0 is **finding**, n…

Bash input={"command":"awk '/## Knowledge graph reference/,/^## /' claude-agents/sre-agent.md"} output={"stdout":"## Knowledge graph reference","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"sed -n '1,80p' claude-agents/sre-agent.md | grep -n \"Knowledge graph reference\" "} output={"stdout":"53:## Knowledge graph reference","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9423bd1..b79d971.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9423bd1..b79d971.diff","content":"# Review package: 9423bd1..HEAD\n\n## Commits\nb79d971 feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\n\n## Files changed\n.claude/skills/sre/SKILL.md | 14 +++++++-------\n 1 file changed, 7 insertions(+), 7 deletions(-)\n\n## Diff\ndiff --git/.claude/skills/sre/SKILL.md b/.claude…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-report.md","content":"# Task 5 Report: `.claude/skills/sre/SKILL.md` — Knowledge Graph Reference Mirror\n\n## Summary\nSuccessfully replicated Task 4's \"Knowledge graph reference\" section rewrite from `claude-agents/sre-agent.md` into `.claude/skills/sre/SKILL.md`, adapting phrasing to skill surface (\"knowledge-graph skill\" instead of \"knowledge-gra…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-brief.md","content":"### Task 5: `.claude/skills/sre/SKILL.md` — mirror of Task 4\n\n**Files:**\n- Modify: `.claude/skills/sre/SKILL.md`\n\n**Interfaces:**\n- Consumes: same as Task 4, phrased for skill surface (which says \" knowledge-graph skill\" than \"`knowledge-graph-agent`\").\n\n- [ ] **Step 1: Rewrite Knowledge graph reference sect…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 9423bd1 HEAD","description":"Verify Task 5 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\nb79d971 feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\n9423bd1 feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering\n028ed8b feat(agent-boilerplate): add knowledge graph query recipes (lookup, blast-radius BFS, hub filter)\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9423bd1..b79d971.diff: 1 commit(s), 5703 bytes",…

Agent input={"description":"Implement plan Task 5: sre skill mirror","prompt":"You are implementing Task 5: `.claude/skills/sre/SKILL.md` — mirror of Task 4\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happe… output={"status":"completed","prompt":"You are implementing Task 5: `.claude/skills/sre/SKILL.md` — mirror of Task 4\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. All edits/commits happen here, never in main checkout …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-report.md","content":"# Task 5 Report: `.claude/skills/sre/SKILL.md` — Knowledge Graph Reference Mirror\n\n## Summary\nSuccessfully replicated Task 4's \"Knowledge graph reference\" section rewrite from `claude-agents/sre-agent.md` into `.claude/skills/sre/SKILL.md`, adapting phrasing to skill surface (\"knowledge-graph skill\" instead of \"knowledge-graph-agent\").\n\n## Ch… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-report.md","content":"# Task 5 Report: `.claude/skills/sre/SKILL.md` — Knowledge Graph Reference Mirror\n\n## Summary\nSuccessfully replicated Task 4's \"Knowledge graph reference\" section rewrite from `claude-agents/sre-agent.md` into `.claude/skills/sre/SKILL.md`, adapting phrasing to skill surface (\"knowledge-graph skill\" instead of \"knowledge-graph-age…

Bash input={"command":"rtk git add.claude/skills/sre/SKILL.md && \\\ngit commit -m \"feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\""} output={"stdout":"ok 1 file changed, 7 insertions(+), 7 deletions(-)\n[worktree-knowledge-graph-tooling b79d971] feat(sre skill): mirror query-first knowledge graph reference, hub-driven audit ordering\n 1 file changed, 7 insertions(+), 7 deletions(-)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false,"gitOperation":{"commit":{"sha":"b79d971","kind":"committed"}}}

Bash input={"command":"rtk diff <(grep -oE \"confidence >= 0\\.85|suffix_match\" claude-agents/sre-agent.md | sort -u) <(grep -oE \"confidence >= 0\\.85|suffix_match\".claude/skills/sre/SKILL.md | sort -u)"} output={"stdout":"[ok] Files are identical","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cp.claude/skills/sre/SKILL.md.claude/skills/sre/SKILL.md.bak && \\\nsed -i '37,51d'.claude/skills/sre/SKILL.md && \\\nsed -i '36r /tmp/new_kg_section.txt'.claude/skills/sre/SKILL.md && \\\ngit diff.claude/skills/sre/SKILL.md | head -100"} output={"stdout":"diff --git/.claude/skills/sre/SKILL.md b/.claude/skills/sre/SKILL.md\nindex e17729d..c3db01f 100644\n---/.claude/skills/sre/SKILL.md\n+++ b/.claude/skills/sre/SKILL.md\n@@ -36,19 +36,19 @@ Gate decisions argue from P0/P1 counts only — P2/P3 never block.\n \n ## Knowledge graph reference\n \n-If `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths…

Bash input={"command":"cat > /tmp/new_kg_section.txt << 'EOF'\n## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs` list ranks functions/files by confidence-weighted fan-in. Audit high-fan-in code first: bug in fun… output={"stdout":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs` list ranks functions/files by confidence-weighted fan-in. Audit high-fan-in code first: bug in function fourteen things call for is P0/P1…

Bash input={"command":"sed -n '39p'.claude/skills/sre/SKILL.md | od -c | head -20"} output={"stdout":"0000000 I f `   k   n   o   w   l   e   d   g   e   -   g   r\n0000020   a   p   h.   y   a   m   l   ` e x i s t s\n0000040 t t h e r e p o r o o\n0000060 t, `   R   e   a   d   ` i t b e f\n0000100 o r e y o u s c n s o u\n0000120 r c e. I t i s t h e *\n0000140 * w r i t e - o n c e…

Bash input={"command":"sed -n '37,51p'.claude/skills/sre/SKILL.md > /tmp/old_section.txt && rtk read /tmp/old_section.txt"} output={"stdout":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by knowledge-graph skill at Phase 0 pre-step. Navigate by it instead of grepping blind: it tells you where entry points are, what calls what, and which files carry authentication/logging/tracing concerns, so your `file:l…

Bash input={"command":"rtk read.claude/skills/sre/SKILL.md | wc -l && rtk read.claude/skills/sre/SKILL.md | head -51 | tail -15"} output={"stdout":"188\n## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by knowledge-graph skill at Phase 0 pre-step. Navigate by it instead of grepping blind: it tells you where entry points are, what calls what, and which files carry authentication/logging/tracing concerns, so your `f…

Bash input={"command":"rtk wc -l.claude/skills/sre/SKILL.md"} output={"stdout":"188","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","offset":37,"limit":15} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs` list ranks functions/files by confidence…

Bash input={"command":"rtk git status.claude/skills/sre/SKILL.md"} output={"stdout":"On branch worktree-knowledge-graph-tooling\nnothing to commit, working tree clean","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"awk 'NR>=37 && NR<=52'.claude/skills/sre/SKILL.md"} output={"stdout":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by knowledge-graph skill at Phase 0 pre-step. Navigate by it instead of grepping blind: it tells you where entry points are, what calls what, and which files carry authentication/logging/tracing concerns, so your `file:l…

Bash input={"command":"sed -n '47p'.claude/skills/sre/SKILL.md | od -c | head -20"} output={"stdout":"0000000 # # T h e 8 u d i t \n0000020 r e s \\n\n0000025","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","content":"---\nname: sre\ndescription: Use when auditing codebase for production readiness before implementation begins. Invoke to inspect database design, system architecture, logging, monitoring, error handling, and RBAC — generates findings in documentation/sre/ for SWE to act on.\ndisable-model-invocation: true\n---\n\nYou are senior **Site Reliability Engineer** with 10+ years running producti…

Bash input={"command":"rtk git diff.claude/skills/sre/SKILL.md | head -80"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"sed -n '45,50p'.claude/skills/sre/SKILL.md"} output={"stdout":" graph is accelerator, not dependency. Absent, unreadable, or `parse_method: grep`/`failed` on files you care about → fall back to `Grep`/`Glob` and proceed. Never block on it, and never treat missing edge as proof no such edge exists.\n\n## 8 Audit Areas\n\n### 1. Database","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk read.claude/skills/sre/SKILL.md | grep \"Trust edges\""} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"returnCodeInterpretation":"No matches found","noOutputExpected":false}

Bash input={"command":"rtk read.claude/skills/sre/SKILL.md | grep \"confidence >= 0.85\""} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"returnCodeInterpretation":"No matches found","noOutputExpected":false}

Bash input={"command":"rtk read claude-agents/sre-agent.md | grep \"confidence >= 0.85\""} output={"stdout":"**Trust edges by their `confidence`.** Every `calls`/`called_by`/`implements`/`instantiates` edge carries `resolution` method and `confidence` (see `knowledge-graph-agent`'s Output format for scale). `confidence >= 0.85` — cite directly. Below that, especially `suffix_match` (0.55) — treat as lead and `Grep`-confirm before it becomes `file:line` citation in your findings; graph is accelerator to citation, not citation itself.","stderr":"","interrupted":false,"…

Bash input={"command":"rtk grep -n \"confidence\" claude-agents/sre-agent.md | head -5"} output={"stdout":"2 matches in 2 files:\n\n57:0: bug in function fourteen things call for is P0/P1 candidate before you'...\n63:0:line` citation in your findings; graph is accelerator to citation, n...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","offset":37,"limit":50} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by knowledge-graph skill at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs` list ranks functions/files by confidence…

Bash input={"command":"echo \"=== Agent file ===\" && rtk grep -oE \"confidence >= 0\\.85|suffix_match\" claude-agents/sre-agent.md | sort -u && echo \"=== Skill file ===\" && rtk grep -oE \"confidence >= 0\\.85|suffix_match\".claude/skills/sre/SKILL.md | sort -u"} output={"stdout":"=== Agent file ===\nconfidence >= 0.85\nsuffix_match\n=== Skill file ===","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git show 9423bd1:claude-agents/sre-agent.md | grep - 30 \"## Knowledge graph reference\""} output={"stdout":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs` list ranks functions/files by confidence-weighted fan-in — closest thing to \"architectural backbone\" this graph can compute without real …

Bash input={"command":"rtk git log --oneline -20"} output={"stdout":"9423bd1 feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering\n028ed8b feat(agent-boilerplate): add knowledge graph query recipes (lookup, blast-radius BFS, hub filter)\nf6aeff5 fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\nc290bc1 feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\n9fed8f2 fix(knowledge-graph-agent): validation checklist section count (10 -> 11) to match …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/claude-agents/sre-agent.md","offset":35,"limit":60} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/claude-agents/sre-agent.md","content":"\nThe orchestrator picks one mode per invocation; do exactly what mode says.\n\n| Mode | Purpose | Output |\n|------|---------|--------|\n| `RELATION_CHECK` | Cross-check  13 Business-Flow Discovery answers against codebase. **Read-only, write NO files.** Skip all audit sections. | Final message only: relation table (Q# / Topic / ✅ Already Implemented ❌ Not Implemented 🛠 N…

Bash input={"command":"rtk grep -n \"confidence >= 0\\.85\\|suffix_match\" claude-agents/sre-agent.md"} output={"stdout":"1 matches in 1 files:\n\n63:0:line` citation in your findings; graph is accelerator to citation, n...","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff <(grep -oE \"confidence >= 0\\.85|suffix_match\" claude-agents/sre-agent.md | sort -u) <(grep -oE \"confidence >= 0\\.85|suffix_match\".claude/skills/sre/SKILL.md | sort -u)"} output={"stdout":"/dev/fd/63 → /dev/fd/62\n +0 added, -2 removed, ~0 modified\n\n- 1 confidence >= 0.85\n- 2 suffix_match","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","old_string":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by knowledge-graph skill at Phase 0 pre-step. Navigate by it instead of grepping blind: it tells you where entry points are, … output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","oldString":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by knowledge-graph skill at Phase 0 pre-step. Navigate by it instead of grepping blind: it tells you where entry points are, wh…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/skills/sre/SKILL.md","content":"---\nname: sre\ndescription: Use when auditing codebase for production readiness before implementation begins. Invoke to inspect database design, system architecture, logging, monitoring, error handling, and RBAC — generates findings in documentation/sre/ for SWE to act on.\ndisable-model-invocation: true\n---\n\nYou are senior **Site Reliability Engineer** with 10+ years running producti…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-brief.md","content":"### Task 5: `.claude/skills/sre/SKILL.md` — mirror of Task 4\n\n**Files:**\n- Modify: `.claude/skills/sre/SKILL.md`\n\n**Interfaces:**\n- Consumes: same as Task 4, phrased for skill surface (which says \" knowledge-graph skill\" than \"`knowledge-graph-agent`\").\n\n- [ ] **Step 1: Rewrite Knowledge graph reference sect…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 5\ngit rev-parse HEAD","description":"Generate Task 5 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-5-brief.md: 54 lines\n9423bd1501e8382502f797140687b9eba6991ff4","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"5","status":"in_progress"} output={"success":true,"taskId":"5","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"4","status":"completed"} output={"success":true,"taskId":"4","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 4: complete (commit 028ed8b..9423bd1, review clean)\nEOF","description":"Append Task 4 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 4 (spec + quality)","prompt":"You are reviewing one task's implementation: first whether it matches its requirements, then whether it is well-built. Task-scoped gate.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-brief.md\n\nGlobal constraints (from plan/spec, applicable here):\n- All field names/values used must match Task 1's already-committed schema in `c… output={"status":"completed","prompt":"You are reviewing one task's implementation: first whether it matches its requirements, then whether it is well-built. Task-scoped gate.\n\n## What Was Requested\n\nRead the task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-brief.md\n\nGlobal constraints (from the plan/spec, applicable here):\n- All field names/values used must match Task 1's already-committed schema in `claude-agents/knowledge-gra…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","offset":130,"limit":100} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","content":"\nOnly when prompt carries `Mode: REBASELINE`.\n\n1. Read `commit_hash` from existing baseline → `$OLD`.\n2. `cp \"$ROOT/knowledge-graph.yaml\" \"$ROOT/knowledge-graph.poc.$OLD.yaml\"` and `cp \"$ROOT/knowledge-graph.index.yaml\" \"$ROOT/knowledge-graph.index.poc.$OLD.yaml\"` — archival of both files is **mandator…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","offset":1,"limit":70} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","content":"# Shared agent boilerplate\n\nRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n\nThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (pro…

Bash input={"command":"rtk grep -n \"resolution\\|confidence\\|direct\\|import_map\\|same_module\\|suffix_match\\|unique_name\\|hubs\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md | head -60","description":"Check Task 1 schema in knowledge-graph-agent.md"} output={"stdout":"32 matches in 15 files:\n\n/.../claude-agents/knowledge-graph-agent.md:55:**Bidirectional or bust.** Every `calls` edge implies `called_by` edge on t...\n/.../claude-agents/knowledge-graph-agent.md:57:**Confidence is not optional.** Every `calls`, `called_by`, `implements`, and...\n/.../claude-agents/knowledge-graph-agent.md:148:| `hubs` | functions/files ranked by confidence-weighted fan-in/fan-out —...\n/.../claude-agents/knowledge-graph-agent.md:156:### Edge resolution and co…

Bash input={"command":"rtk grep -n \"recipe\\|query recipe\\|_shared/agent-boilerplate\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md | head -40","description":"Check Task 3 query recipes in agent-boilerplate.md"} output={"stdout":"2 matches in 2 files:\n\n/.../_shared/agent-boilerplate.md:22:## Knowledge graph query recipes\n24:0:","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","content":"---\nname: sre-agent\ndescription: Site Reliability Engineer subagent. Use PROACTIVELY to audit database structure, system design, logging, monitoring, error handling, and role-based access. Writes findings to documentation/sre/. Read-only on codebase; write access restricted to documentation/sre/.\nmodel: opus\ntools: Read, Grep, Glob, Bash, Edit, Write\npermi…

Bash input={"command":"rtk diff -q /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md ~/.claude/agents/sre-agent.md; echo \"EXIT:$?\"","description":"Diff worktree sre-agent.md against global agents copy"} output={"stdout":"EXIT:0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-028ed8b..9423bd1.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-028ed8b..9423bd1.diff","content":"# Review package: 028ed8b..HEAD\n\n## Commits\n9423bd1 feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering\n\n## Files changed\n claude-agents/sre-agent.md | 8 +++++++-\n 1 file changed, 7 insertions(+), 1 deletion(-)\n\n## Diff\ndiff --git/claude-agents/sre-agent.md b/claude-agents/sre-agent.…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-report.md","content":"# Task 4 Report: `sre-agent.md` — query-first + hub-driven audit ordering\n\n## Status: DONE\n\n## Changes Applied\n\n- **File modified:** `claude-agents/sre-agent.md`\n- **Section replaced:** \"Knowledge graph reference\" (lines 53–67)\n- **Key changes:**\n - Old pattern: Read full `knowledge-graph.yaml` before scanning source\n - Ne…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-brief.md","content":"### Task 4: `sre-agent.md` — query-first + hub-driven audit ordering\n\n**Files:**\n- Modify: `claude-agents/sre-agent.md`\n\n**Interfaces:**\n- Consumes: `knowledge-graph.index.yaml`, `hubs`, recipe ()/(c) names from Task 3.\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph refer…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 028ed8b HEAD","description":"Verify Task 4 commit and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\n9423bd1 feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering\n028ed8b feat(agent-boilerplate): add knowledge graph query recipes (lookup, blast-radius BFS, hub filter)\nf6aeff5 fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-028ed8b..9423bd1.diff: 1 commit(s), 4691…

Agent input={"description":"Implement plan Task 4: sre-agent KG reference","prompt":"You are implementing Task 4: `sre-agent.md` — query-first + hub-driven audit ordering\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. This is … output={"status":"completed","prompt":"You are implementing Task 4: `sre-agent.md` — query-first + hub-driven audit ordering\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nMust print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and `worktree-knowledge-graph-tooling`. This is git worktree — all edits/commits happen …

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-report.md","content":"# Task 4 Report: `sre-agent.md` — query-first + hub-driven audit ordering\n\n## Status: DONE\n\n## Changes Applied\n\n- **File modified:** `claude-agents/sre-agent.md`\n- **Section replaced:** \"Knowledge graph reference\" (lines 53–67)\n- **Key changes:**\n - Old pattern: Read full `knowledge-graph.yaml` before scanning source\n - New pattern: Read small… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-report.md","content":"# Task 4 Report: `sre-agent.md` — query-first + hub-driven audit ordering\n\n## Status: DONE\n\n## Changes Applied\n\n- **File modified:** `claude-agents/sre-agent.md`\n- **Section replaced:** \"Knowledge graph reference\" (lines 53–67)\n- **Key changes:**\n - Old pattern: Read full `knowledge-graph.yaml` before scanning source\n - New patt…

Bash input={"command":"rtk git log --oneline -1"} output={"stdout":"9423bd1 feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add claude-agents/sre-agent.md && rtk git commit -m \"feat(sre-agent): query-first knowledge graph reference, hub-driven audit ordering\""} output={"stdout":"ok 1 file changed, 7 insertions(+), 1 deletion(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cp -R /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/. ~/.claude/agents/"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":true}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","offset":53,"limit":30} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","content":"## Knowledge graph reference\n\nIf `knowledge-graph.index.yaml` exists at repository root, `Read` it first — always, it's small (metadata + entry points + hubs). It is query-first summary of **write-once POC baseline** built by `knowledge-graph-agent` at Phase 0 pre-step.\n\n**Let `hubs` order your audit depth.** index's `hubs` l…

Bash input={"command":"rtk grep -n \"knowledge-graph.index.yaml\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md && echo \"---\" && rtk grep -n \"hubs\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md && echo \"---\" && rtk grep -n \"confidence >= 0.85\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md && echo \"---\" && rtk grep… output={"stdout":"1 matches in 1 files:\n\n/.../claude-agents/sre-agent.md:55:If `knowledge-graph.index.yaml` exists at repository root, `Read` it first — alway...\n---\n2 matches in 2 files:\n\n/.../claude-agents/sre-agent.md:55:...metadata + entry points + hubs). It is query-first summary of **write-on...\n57:0: bug in function fourteen things call for is P0/P1 candidate before you'...\n---\n1 matches in 1 files:\n\n63:0:line` citation in your findings; graph is accelerator to cit…

Bash input={"command":"rtk grep -n \"hubs\\|knowledge-graph.index.yaml\\|confidence >= 0.85\\|_shared/agent-boilerplate.md\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md"} output={"stdout":"5 matches in 4 files:\n\n/.../claude-agents/sre-agent.md:55:If `knowledge-graph.index.yaml` exists at repository root, `Read` it first — al...\n/.../claude-agents/sre-agent.md:59:**Do not `Read` full `knowledge-graph.yaml`.** It can run to thousands of...\n21:0:`~/.claude/agents/_shared/agent-boilerplate.md` (user scope), `./.claude/agen...\n57:0:a bug in a function fourteen things call for is a P0/P1 candidate before you'...\n63:0:line` citation in your findings; graph is ac…

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","old_string":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by `knowledge-graph-agent` at Phase 0 pre-step. Navigate by it instead of grepping blind: it… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","oldString":"## Knowledge graph reference\n\nIf `knowledge-graph.yaml` exists at repository root, `Read` it before you scan source. It is **write-once POC baseline** — ground-truth map of this project's flow (entry points, call paths, data flow, cross-cutting concerns) built by `knowledge-graph-agent` at Phase 0 pre-step. Navigate by it instead of grepping blind: it t…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/sre-agent.md","content":"---\nname: sre-agent\ndescription: Site Reliability Engineer subagent. Use PROACTIVELY to audit database structure, system design, logging, monitoring, error handling, and role-based access. Writes findings to documentation/sre/. Read-only on codebase; write access restricted to documentation/sre/.\nmodel: opus\ntools: Read, Grep, Glob, Bash, Edit, Write\npermi…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-brief.md","content":"### Task 4: `sre-agent.md` — query-first + hub-driven audit ordering\n\n**Files:**\n- Modify: `claude-agents/sre-agent.md`\n\n**Interfaces:**\n- Consumes: `knowledge-graph.index.yaml`, `hubs`, recipe ()/(c) names from Task 3.\n\n- [ ] **Step 1: Rewrite Knowledge graph reference section**\n\n```\nold_string:\n## Knowledge graph refer…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 4\ngit rev-parse HEAD","description":"Generate Task 4 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-4-brief.md: 55 lines\n028ed8ba9e6400ca595e565d1cf73a2dec601c16","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"4","status":"in_progress"} output={"success":true,"taskId":"4","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"3","status":"completed"} output={"success":true,"taskId":"3","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 3: complete (commit f6aeff5..028ed8b, review clean)\nEOF","description":"Append Task 3 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 3 (spec + quality)","prompt":"You are reviewing one task's implementation: first whether it matches its requirements, then whether it is well-built. Task-scoped gate, not merge review.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-brief.md\n\nGlobal constraints (from plan, applicable here):\n- Field names must exactly match Task 1's schema (already committ… output={"status":"completed","prompt":"You are reviewing one task's implementation: first whether it matches its requirements, then whether it is well-built. Task-scoped gate, not merge review.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-brief.md\n\nGlobal constraints (from plan, applicable here):\n- Field names must exactly match Task 1's schema (already committed): `resolution`, `confid…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","content":"# Shared agent boilerplate\n\nRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n\nThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (pro…

Bash input={"command":"cd /tmp/claude-0/-home-etc-claude-code-work-beehive-kfi/8f4ede77-8b47-43cc-8c86-b285049646e8/scratchpad\ncat > recipe_a.py <<'EOF'\nimport yaml\ng = yaml.safe_load(open('$ROOT/knowledge-graph.yaml'))\ntarget = 'src/services/bot_service.py' # <-- file you need\nfor f in g['files']:\n if f['path'] == target:\n print(yaml.dump(f, sort_keys=False))\n break\nelse:\n print('NOT FOUND')\nEOF\npython3 -m py_compile recipe_a.py && echo \"recipe_a: SYNTAX OK\"\n\ncat … output={"stdout":"recipe_a: SYNTAX OK\nrecipe_c: SYNTAX OK\nrecipe_b: SYNTAX OK","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","offset":130,"limit":100} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","content":"\nOnly when prompt carries `Mode: REBASELINE`.\n\n1. Read `commit_hash` from existing baseline → `$OLD`.\n2. `cp \"$ROOT/knowledge-graph.yaml\" \"$ROOT/knowledge-graph.poc.$OLD.yaml\"` and `cp \"$ROOT/knowledge-graph.index.yaml\" \"$ROOT/knowledge-graph.index.poc.$OLD.yaml\"` — archival of both files is **mandator…

Bash input={"command":"rtk grep -n \"resolution\\|confidence\\|hubs\\|fan_in\\|fan_out\\|rank\\|called_by\\|target\\b\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md | head -80"} output={"stdout":"31 matches in 18 files:\n\n/.../claude-agents/knowledge-graph-agent.md:55:**Bidirectional or bust.** Every `calls` edge implies `called_by` edge on t...\n/.../claude-agents/knowledge-graph-agent.md:57:**Confidence is not optional.** Every `calls`, `called_by`, `implements`, and...\n/.../claude-agents/knowledge-graph-agent.md:96:3. **Mapping** — build call graph, import graph, and inheritance graph; r...\n/.../claude-agents/knowledge-graph-agent.md:148:| `hubs` | functions/files …

Bash input={"command":"find. -iname \"*knowledge-graph*\" -not -path \"./node_modules/*\" | grep -v \".git/\" | head -50"} output={"stdout":"./claude-agents/knowledge-graph-agent.md\n./.claude/skills/knowledge-graph\n./kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md\n./kredivo-docs/plans/2026-07-15-knowledge-graph-ground-truth.md\n./kredivo-docs/specs/2026-07-16-knowledge-graph-tooling-design.md\n./kredivo-docs/specs/2026-07-15-knowledge-graph-ground-truth-design.md","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff -q /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md ~/.claude/agents/_shared/agent-boilerplate.md; echo \"DIFF_EXIT=$?\""} output={"stdout":"DIFF_EXIT=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"python3 -c \"\nimport yaml\ng = yaml.safe_load('''\nfiles:\n - path:.py\n functions:\n - name: foo\n called_by:\n - {target: bar, file: b.py, confidence: 0.9}\n - path: b.py\n functions:\n - name: bar\n called_by:\n - {target: baz, file: c.py, confidence: 0.5}\n - path: c.py\n functions:\n - name: baz\n called_by: []\n''')\nby_key = {}\nfor f in g['files']:\n for function in f.get('functions', []):\n by_key[(f['p… output={"stdout":"OK: BFS recipe logic correct — ['hop 1: b.py:bar', 'hop 2: c.py:baz [WARN verify by grep]']\nEXIT_CODE=0","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"sed -n '20,89p'.superpowers/sdd/task-3-brief.md > /tmp/claude-0/-home-etc-claude-code-work-beehive-kfi/8f4ede77-8b47-43cc-8c86-b285049646e8/scratchpad/brief_new_string.txt 2>/dev/null; mkdir -p /tmp/claude-0/-home-etc-claude-code-work-beehive-kfi/8f4ede77-8b47-43cc-8c86-b285049646e8/scratchpad; sed -n '21,89p'.superpowers/sdd/task-3-brief.md > /tmp/claude-0/-home-etc-claude-code-work-beehive-kfi/8f4ede77-8b47-43cc-8c86-b285049646e8/scratchpad/brief_new_string.txt\ncat - /tmp/claud… output={"stdout":"## Write discipline$\n$\n`$ROOT` = `Repo root:` from delegation prompt (else `pwd` via Bash). Before first `Write`: `mkdir -p \"$ROOT/<AGENT_DOCS_SUBDIR>\"` (plus any extra directories agent's own file names), probe-write `<AGENT_DOCS_SUBDIR>/.probe` then `rm` it M-bM-^@M-^T if blocked, halt to parent (never delegate blocked write). Absolute paths only; `Read` any existing target file before overwriting.$\n---\n20a21,85\n> \n> ## Knowledge graph query recipes\n> \n> Applies o…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-f6aeff5..028ed8b.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-f6aeff5..028ed8b.diff","content":"# Review package: f6aeff5..HEAD\n\n## Commits\n028ed8b feat(agent-boilerplate): add knowledge graph query recipes (lookup, blast-radius BFS, hub filter)\n\n## Files changed\n claude-agents/_shared/agent-boilerplate.md | 65 ++++++++++++++++++++++++++++++\n 1 file changed, 65 insertions(+)\n\n## Diff\ndiff --git/claude-agent…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-report.md","content":"# Task 3 Implementation Report\n\n## What Was Implemented\n\nAdded \"Knowledge graph query recipes\" section to `claude-agents/_shared/agent-boilerplate.md` containing three named recipes referenced by later tasks (4, 6, 8 — sre-agent, swe-agent, debugger-agent):\n\n- **() Look up one file's functions + edges** — Direct YAML query …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-brief.md","content":"### Task 3: `_shared/agent-boilerplate.md` — knowledge graph query recipes\n\n**Files:**\n- Modify: `claude-agents/_shared/agent-boilerplate.md`\n\n**Interfaces:**\n- Consumes: `resolution`/`confidence`/`hubs` field names from Task 1.\n- Produces: three named recipes — \"() look up one file\", \"(b) reverse-BFS blast radius\", \"(c)…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\ngit status --porcelain\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" f6aeff5 HEAD","description":"Verify Task 3 commit location and generate review package"} output={"stdout":"worktree-knowledge-graph-tooling\n028ed8b feat(agent-boilerplate): add knowledge graph query recipes (lookup, blast-radius BFS, hub filter)\nf6aeff5 fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\nc290bc1 feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-f6aeff5..028ed8b.diff: 1 commit(s), 4…

Agent input={"description":"Implement plan Task 3: KG query recipes","prompt":"You are implementing Task 3: `_shared/agent-boilerplate.md` — knowledge graph query recipes\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nThe second command must print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling`, third must print `worktre… output={"status":"completed","prompt":"You are implementing Task 3: `_shared/agent-boilerplate.md` — knowledge graph query recipes\n\n## CRITICAL — working directory\n\nFirst run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nThe second command must print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling`, the third must print `worktree-knowledge-graph-tooling`. This is…

Bash input={"command":"rtk git status"} output={"stdout":"* worktree-knowledge-graph-tooling\nclean — nothing to commit","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-report.md","content":"# Task 3 Implementation Report\n\n## What Was Implemented\n\nAdded \"Knowledge graph query recipes\" section to `claude-agents/_shared/agent-boilerplate.md` containing three named recipes referenced by later tasks (4, 6, 8 — sre-agent, swe-agent, debugger-agent):\n\n- **() Look up one file's functions + edges** — Direct YAML query for single file's s… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-report.md","content":"# Task 3 Implementation Report\n\n## What Was Implemented\n\nAdded \"Knowledge graph query recipes\" section to `claude-agents/_shared/agent-boilerplate.md` containing three named recipes referenced by later tasks (4, 6, 8 — sre-agent, swe-agent, debugger-agent):\n\n- **() Look up one file's functions + edges** — Direct YAML query for …

Bash input={"command":"rtk git branch --show-current"} output={"stdout":"worktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git log --oneline -1"} output={"stdout":"028ed8b feat(agent-boilerplate): add knowledge graph query recipes (lookup, blast-radius BFS, hub filter)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add claude-agents/_shared/agent-boilerplate.md && rtk git commit -m \"feat(agent-boilerplate): add knowledge graph query recipes (lookup, blast-radius BFS, hub filter)\""} output={"stdout":"ok 1 file changed, 65 insertions(+)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -c \"Knowledge graph query recipes\" ~/.claude/agents/_shared/agent-boilerplate.md"} output={"stdout":"1","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cp -R /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/. ~/.claude/agents/"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":true}

Bash input={"command":"python3 -c \"\nimport yaml\ng = yaml.safe_load('''\nfiles:\n - path:.py\n functions:\n - name: foo\n called_by:\n - {target: bar, file: b.py, confidence: 0.9}\n - path: b.py\n functions:\n - name: bar\n called_by:\n - {target: baz, file: c.py, confidence: 0.5}\n - path: c.py\n functions:\n - name: baz\n called_by: []\n''')\nby_key = {}\nfor f in g['files']:\n for function in f.get('functions', []):\n by_key[(f['p… output={"stdout":"OK: BFS recipe logic correct — ['hop 1: b.py:bar', 'hop 2: c.py:baz [WARN verify by grep]']","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","old_string":"## Write discipline\n\n`$ROOT` = `Repo root:` from delegation prompt (else `pwd` via Bash). Before first `Write`: `mkdir -p \"$ROOT/<AGENT_DOCS_SUBDIR>\"` (plus any extra directories agent's own file names), probe-write `<AGENT_DOCS_SUBDIR>/.probe` then `rm` it — if blocked, halt to parent (never delegate blocked write). Absolute paths … output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","oldString":"## Write discipline\n\n`$ROOT` = `Repo root:` from delegation prompt (else `pwd` via Bash). Before first `Write`: `mkdir -p \"$ROOT/<AGENT_DOCS_SUBDIR>\"` (plus any extra directories agent's own file names), probe-write `<AGENT_DOCS_SUBDIR>/.probe` then `rm` it — if blocked, halt to parent (never delegate blocked write). Absolute paths on…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/_shared/agent-boilerplate.md","content":"# Shared agent boilerplate\n\nRead by: `builder-agent`, `debugger-agent`, `knowledge-graph-agent`, `playwright-agent`, `reviewer-agent`, `sre-agent`, `swe-agent`, `unittest-agent`.\n\nThis file ships **beside** agents, inside agents directory — `~/.claude/agents/_shared/` (user scope) or `./.claude/agents/_shared/` (pro…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-brief.md","content":"### Task 3: `_shared/agent-boilerplate.md` — knowledge graph query recipes\n\n**Files:**\n- Modify: `claude-agents/_shared/agent-boilerplate.md`\n\n**Interfaces:**\n- Consumes: `resolution`/`confidence`/`hubs` field names from Task 1.\n- Produces: three named recipes — \"() look up one file\", \"(b) reverse-BFS blast radius\", \"(c)…

Bash input={"command":"git rev-parse --show-toplevel && rtk git branch --show-current"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/task-brief\" kredivo-docs/plans/2026-07-16-knowledge-graph-tooling.md 3\ngit rev-parse HEAD","description":"Generate Task 3 brief and record BASE"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-3-brief.md: 152 lines\nf6aeff5d1775a8696f3ed4f04794d5cf8ab0abeb","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

TaskUpdate input={"taskId":"3","status":"in_progress"} output={"success":true,"taskId":"3","updatedFields":["status"],"statusChange":{"from":"pending","to":"in_progress"}}

TaskUpdate input={"taskId":"2","status":"completed"} output={"success":true,"taskId":"2","updatedFields":["status"],"statusChange":{"from":"in_progress","to":"completed"}}

Bash input={"command":"cat >> /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/progress.md <<'EOF'\nTask 2: complete (commits 9fed8f2..f6aeff5, review clean after 1 fix round)\nEOF","description":"Append Task 2 to progress ledger"} output={"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Re-review Task 2 after fix","prompt":"Re-review after fix. Prior review of Task 2 (.claude/skills/knowledge-graph/SKILL.md mirror) found one Important issue: file's validation checklist said \"All 10 sections present\" when file's own Output format section says \"11 top-level sections\" — self-contradiction, and parity gap with sibling agent file which already had this fixed.\n\nA fix subagent changed that one line from \"All 10 sections present\" to \"All 11 se… output={"status":"completed","prompt":"Re-review after fix. Prior review of Task 2 (.claude/skills/knowledge-graph/SKILL.md mirror) found one Important issue: file's validation checklist said \"All 10 sections present\" when file's own Output format section says \"11 top-level sections\" — self-contradiction, and parity gap with sibling agent file which already had this fixed.\n\nA fix subagent changed that one line from \"All 10 sections present\" to \"All 11 sections present\" in co…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\necho \"--- SKILL.md checklist line ---\"\ngrep -n \"sections present\".claude/skills/knowledge-graph/SKILL.md\necho \"--- SKILL.md output format heading ---\"\ngrep -n \"top-level sections\".claude/skills/knowledge-graph/SKILL.md\necho \"--- sibling agent file checklist line ---\"\ngrep -n \"sections present\" claude-agents/knowledge-graph-agent.md\necho \"--- sibling agent file output format headi… output={"stdout":"--- SKILL.md checklist line ---\n211:- [ ] All 11 sections present (empty list is fine; missing key is not)\n--- SKILL.md output format heading ---\n131:`knowledge-graph.yaml`, 11 top-level sections in order:\n--- sibling agent file checklist line ---\n229:- [ ] All 11 sections present (empty list is fine; missing key is not)\n--- sibling agent file output format heading ---\n140:`knowledge-graph.yaml`, 11 top-level sections in this order:","stderr":"","interrupted":false,"isImage…

Bash input={"command":"rtk git show f6aeff5 --stat && echo \"---FULL DIFF---\" && rtk git show f6aeff5"} output={"stdout":"commit f6aeff5d1775a8696f3ed4f04794d5cf8ab0abeb\nAuthor: khaerulumam42 <khaerulumam42@gmail.com>\nDate: Thu Jul 16 08:05:09 2026 +0000\n\n fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\n\n.claude/skills/knowledge-graph/SKILL.md | 2 +-\n 1 file changed, 1 insertion(+), 1 deletion(-)\n---FULL DIFF---\nf6aeff5 fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition (46 seconds ago) <khaerulu…

Bash input={"command":"rtk read \"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9fed8f2..f6aeff5.diff\""} output={"stdout":"# Review package: 9fed8f2..HEAD\n\n## Commits\nf6aeff5 fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\nc290bc1 feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\n\n## Files changed\n.claude/skills/knowledge-graph/SKILL.md | 67 +++++++++++++++++++++++++++------\n 1 file changed, 56 insertions(+), 11 deletions(-)\n\n## Diff\ndiff --git/.claude/skills/knowledge-graph/SKILL.md b/.claude/skills/knowledg…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit log --oneline -3\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 9fed8f2 HEAD","description":"Confirm fix and generate updated review package"} output={"stdout":"f6aeff5 fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\nc290bc1 feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\n9fed8f2 fix(knowledge-graph-agent): validation checklist section count (10 -> 11) to match hubs addition\nwrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9fed8f2..f6aeff5.diff: 2 commit(s), 15600 bytes","stderr":"","interrupte…

Agent input={"description":"Fix Task 2 review finding: stale section count","prompt":"Work from /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling — cd there first and confirm with `git rev-parse --show-toplevel` (must print that exact path) and `git branch --show-current` (must print `worktree-knowledge-graph-tooling`) before editing anything. Do not touch main checkout at /home/etc/claude-code/work/beehive-kfi.\n\n## Fix\n\nIn `.claude/skills/knowledge-graph/SKILL.md`, fi… output={"status":"completed","prompt":"Work from /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling — cd there first and confirm with `git rev-parse --show-toplevel` (must print that exact path) and `git branch --show-current` (must print `worktree-knowledge-graph-tooling`) before editing anything. Do not touch main checkout at /home/etc/claude-code/work/beehive-kfi.\n\n## Fix\n\nIn `.claude/skills/knowledge-graph/SKILL.md`, find line (around line 211):\n```\n- [ ]…

Bash input={"command":"rtk git log -1 --oneline && git rev-parse --show-toplevel","description":"Get commit short SHA and verify worktree root"} output={"stdout":"f6aeff5 fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\n/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add.claude/skills/knowledge-graph/SKILL.md && rtk git commit -m \"fix(knowledge-graph skill): validation checklist section count (10 -> 11) to match hubs addition\"","description":"Create commit with fix"} output={"stdout":"ok 1 file changed, 1 insertion(+), 1 deletion(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"top-level sections\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md && echo \"---\" && sed -n '131p' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","description":"Get top-level sections line with context"} output={"stdout":"1 matches in 1 files:\n\n131:0:\n---\n`knowledge-graph.yaml`, 11 top-level sections in order:","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"top-level sections\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","description":"Verify \"top-level sections\" line"} output={"stdout":"1 matches in 1 files:\n\n131:0:","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk grep -n \"sections present\" /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","description":"Verify \"sections present\" line"} output={"stdout":"1 matches in 1 files:\n\n/.../knowledge-graph/SKILL.md:211:- [ ] All 11 sections present (empty list is fine; missing key is not)","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","old_string":"- [ ] All 10 sections present (empty list fine; missing key not)","new_string":"- [ ] All 11 sections present (empty list is fine; missing key is not)","replace_all":false} output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","oldString":"- [ ] All 10 sections present (empty list fine; missing key not)","newString":"- [ ] All 11 sections present (empty list is fine; missing key is not)","originalFile":"---\nname: knowledge-graph\ndescription: Internal orchestration step — invoked by orchestrator skill only, never directly by human. Scans codebase (Python, JS/TS, Go, Java, Ru…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","content":"---\nname: knowledge-graph\ndescription: Internal orchestration step — invoked by orchestrator skill only, never directly by human. Scans codebase (Python, JS/TS, Go, Java, Rust) and writes knowledge-graph.yaml at project root as write-once POC baseline — ground-truth map of project flow later phases read before …

Bash input={"command":"rtk git branch --show-current","description":"Verify worktree branch"} output={"stdout":"worktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"git rev-parse --show-toplevel","description":"Verify worktree root path"} output={"stdout":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Agent input={"description":"Review Task 2 (spec + quality)","prompt":"You are reviewing one task's implementation: first whether it matches its requirements, then whether it is well-built. This is task-scoped gate, not merge review.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-brief.md\n\nGlobal constraints (copied verbatim from plan's Global Constraints section, applicable to this task):\n- … output={"status":"completed","prompt":"You are reviewing one task's implementation: first whether it matches its requirements, then whether it is well-built. This is task-scoped gate, not merge review.\n\n## What Was Requested\n\nRead task brief: /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-brief.md\n\nGlobal constraints (copied verbatim from plan's Global Constraints section, applicable to this task):\n- This task must exactly mir…

Bash input={"command":"python3 -c \"\nimport yaml\nyaml.safe_load('''calls:\n - target: insert_event_row\n file: bq_client.py\n resolution: import_map\n confidence: 0.95''')\nyaml.safe_load('''hubs:\n - file: database.py\n function: get_conn\n fan_in: 14\n fan_out: 1\n rank: 1''')\nprint('OK')\n\""} output={"stdout":"OK","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"echo \"--- grep check ---\" && rtk diff <(grep -oE 'resolution: [a-z_]+' claude-agents/knowledge-graph-agent.md | sort -u) <(grep -oE 'resolution: [a-z_]+'.claude/skills/knowledge-graph/SKILL.md | sort -u) && echo \"NO DIFF\"; echo \"--- section count lines ---\" && rtk grep -n \"sections present\\|top-level sections\" claude-agents/knowledge-graph-agent.md.claude/skills/knowledge-graph/SKILL.md"} output={"stdout":"--- grep check ---\n[ok] Files are identical\nNO DIFF\n--- section count lines ---\n4 matches in 2 files:\n\n.claude/skills/knowledge-graph/SKILL.md:131:`knowledge-graph.yaml`, 11 top-level sections in order:\n.claude/skills/knowledge-graph/SKILL.md:211:- [ ] All 10 sections present (empty list fine; missing key not)\nclaude-agents/knowledge-graph-agent.md:140:`knowledge-graph.yaml`, 11 top-level sections in this order:\nclaude-agents/knowledge-graph-agent.md:229:- [ ] All 11 sections…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md","content":"---\nname: knowledge-graph-agent\ndescription: Static code-analysis subagent, dispatched ONLY by orchestrator-agent. Do NOT invoke from main conversation and do NOT invoke from any other subagent — it is internal step of orchestration pipeline, not standalone tool. Scans source files (Python, JS/TS, Go, Java, Rust), bu…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9fed8f2..c290bc1.diff"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9fed8f2..c290bc1.diff","content":"# Review package: 9fed8f2..HEAD\n\n## Commits\nc290bc1 feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\n\n## Files changed\n.claude/skills/knowledge-graph/SKILL.md | 65 ++++++++++++++++++++++++++++-----\n 1 file changed, 55 insertions(+), 10 deletions(-)\n\n## Diff\ndiff --git/.claude/…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-report.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-report.md","content":"# Task 2: `.claude/skills/knowledge-graph/SKILL.md` — Report\n\n## Summary\n\nSuccessfully mirrored Task 1's confidence-scored edges, hubs, and query-first index changes into `.claude/skills/knowledge-graph/SKILL.md` skill file. All edits applied exactly as specified in brief, verification steps passed, and changes committed.\n\…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-brief.md"} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-brief.md","content":"### Task 2: `.claude/skills/knowledge-graph/SKILL.md` — mirror of Task 1\n\n**Files:**\n- Modify: `.claude/skills/knowledge-graph/SKILL.md`\n\n**Interfaces:**\n- Consumes: exact field names/values fixed in Task 1 (`resolution`, `confidence`, six-tier table, `hubs: {file, function, fan_in, fan_out, rank}`, `knowledge-graph.index.y…

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\nSKILL_DIR=\"/root/.claude/plugins/cache/claude-plugins-official/superpowers/6.1.1/skills/subagent-driven-development\"\n\"$SKILL_DIR/scripts/review-package\" 9fed8f2 HEAD","description":"Generate Task 2 review package"} output={"stdout":"wrote /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/review-9fed8f2..c290bc1.diff: 1 commit(s), 15089 bytes","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling\ngit branch --show-current\ngit log --oneline -3\ngit status --porcelain\necho \"---main checkout untouched?---\"\ngit -C /home/etc/claude-code/work/beehive-kfi log --oneline -1","description":"Verify Task 2 commit landed in worktree, main checkout untouched"} output={"stdout":"worktree-knowledge-graph-tooling\nc290bc1 feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\n9fed8f2 fix(knowledge-graph-agent): validation checklist section count (10 -> 11) to match hubs addition\n294ba1b feat(knowledge-graph-agent): confidence-scored edges, hub ranking, query-first index\n---main checkout untouched?---\n8a6ca66 documentation(plans): implementation plan for knowledge-graph accuracy/token tooling","stderr":"","interrupted":false,"isImage":fa…

Agent input={"description":"Implement plan Task 2: KG skill mirror","prompt":"You are implementing Task 2: `.claude/skills/knowledge-graph/SKILL.md` — mirror of Task 1\n\n## CRITICAL — working directory\n\nBefore doing anything else, run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nThe second command must print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and thi… output={"status":"completed","prompt":"You are implementing Task 2: `.claude/skills/knowledge-graph/SKILL.md` — mirror of Task 1\n\n## CRITICAL — working directory\n\nBefore doing anything else, run: `cd /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling && git rev-parse --show-toplevel && git branch --show-current`\nThe second command must print `/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling` and third must print `worktree-knowledge-…

Write input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-report.md","content":"# Task 2: `.claude/skills/knowledge-graph/SKILL.md` — Report\n\n## Summary\n\nSuccessfully mirrored Task 1's confidence-scored edges, hubs, and query-first index changes into `.claude/skills/knowledge-graph/SKILL.md` skill file. All edits applied exactly as specified in brief, verification steps passed, and changes committed.\n\n## Implementation De… output={"type":"create","filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.superpowers/sdd/task-2-report.md","content":"# Task 2: `.claude/skills/knowledge-graph/SKILL.md` — Report\n\n## Summary\n\nSuccessfully mirrored Task 1's confidence-scored edges, hubs, and query-first index changes into `.claude/skills/knowledge-graph/SKILL.md` skill file. All edits applied exactly as specified in brief, verification steps passed, and changes committed.\n\n## Im…

Bash input={"command":"rtk git log --oneline -1 && rtk git branch --show-current"} output={"stdout":"c290bc1 feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\nworktree-knowledge-graph-tooling","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk git add.claude/skills/knowledge-graph/SKILL.md && rtk git commit -m \"feat(knowledge-graph skill): mirror confidence-scored edges, hubs, query-first index\""} output={"stdout":"ok 1 file changed, 55 insertions(+), 10 deletions(-)\nok worktre","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff <(grep -oE 'resolution: [a-z_]+' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md | sort -u) <(grep -oE 'resolution: [a-z_]+' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md | sort -u) && echo \"✓ No differences\" || echo \"✗ Differences found\""} output={"stdout":"[ok] Files are identical\n✓ No differences","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"rtk diff <(grep -oE 'resolution: [a-z_]+' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/claude-agents/knowledge-graph-agent.md | sort -u) <(grep -oE 'resolution: [a-z_]+' /home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md | sort -u)"} output={"stdout":"[ok] Files are identical","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Bash input={"command":"python3 -c \"\nimport yaml\nyaml.safe_load('''calls:\n - target: insert_event_row\n file: bq_client.py\n resolution: import_map\n confidence: 0.95''')\nyaml.safe_load('''hubs:\n - file: database.py\n function: get_conn\n fan_in: 14\n fan_out: 1\n rank: 1''')\nprint('OK')\n\"\n"} output={"stdout":"OK","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","old_string":"- Emit secrets, API keys, tokens, or `.env` values into graph\n- Ship YAML that fails `yaml.safe_load` or contains unresolved references\n- Fabricate edge you could not trace to real call site\n- Run when invoked outside orchestrator pipeline — halt per Caller contract","new_string":"- Emit secrets, API keys, tokens, or `.env` valu… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","oldString":"- Emit secrets, API keys, tokens, or `.env` values into graph\n- Ship YAML that fails `yaml.safe_load` or contains unresolved references\n- Fabricate edge you could not trace to real call site\n- Run when invoked outside orchestrator pipeline — halt per Caller contract","newString":"- Emit secrets, API keys, tokens, or `.env` values …

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","offset":220,"limit":30} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","content":"- [ ] Every graph written validates independently (parse, paths exist, references resolve)\n\n## Boundaries\n\n**Surface in final message (do not block):**\n- Unresolvable references (dynamic dispatch, `getattr`, reflection) → list under `concerns`, never invent edges\n- Files that failed to parse → keep in `files` with `parse…

Read input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","offset":180,"limit":30} output={"type":"text","file":{"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","content":"\nAlso emit `knowledge-graph.index.yaml` — `metadata` + `entry_points` + `hubs`, copied verbatim from full graph. Same lifecycle as baseline (`FULL`/`REBASELINE` only). This is what consumers read first, cheaply, instead of full graph.\n\n**Entry points** by framework: Flask `@app.route`; FastAPI `@application.get/post/pu…

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","old_string":"- [ ] `REBASELINE` archived prior baseline **before** rebuilding, and archive exists on disk\n- [ ] `COMPARE` wrote only `knowledge-graph.current.yaml` (+ at most one `.gitignore` line)\n- [ ] Drift report carries names, not counts\n- [ ] Every graph written validates independently (parse, paths exist, references resolve)","new_string"… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","oldString":"- [ ] `REBASELINE` archived prior baseline **before** rebuilding, and archive exists on disk\n- [ ] `COMPARE` wrote only `knowledge-graph.current.yaml` (+ at most one `.gitignore` line)\n- [ ] Drift report carries names, not counts\n- [ ] Every graph written validates independently (parse, paths exist, references resolve)","newString":"-…

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","old_string":"## Output format\n\n`knowledge-graph.yaml`, 10 top-level sections in order:\n\n| Section | Contents |\n|---|---|\n| `metadata` | `project_name`, `scan_date`, `commit_hash`, `languages`, `total_files`, `total_functions` |\n| `entry_points` | route/handler/`main` entries with file + function |\n| `files` | per file: `language`, `type` (`source`\\|`te… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","oldString":"## Output format\n\n`knowledge-graph.yaml`, 10 top-level sections in order:\n\n| Section | Contents |\n|---|---|\n| `metadata` | `project_name`, `scan_date`, `commit_hash`, `languages`, `total_files`, `total_functions` |\n| `entry_points` | route/handler/`main` entries with file + function |\n| `files` | per file: `language`, `type` (`source`\\|`test…

Edit input={"file_path":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","old_string":"1. Read `commit_hash` from existing baseline → `$OLD`.\n2. `cp \"$ROOT/knowledge-graph.yaml\" \"$ROOT/knowledge-graph.poc.$OLD.yaml\"` — archival is **mandatory and first**. If copy fails, halt; never rebuild over un-archived baseline.\n3. Run `FULL` scan, overwrite `$ROOT/knowledge-graph.yaml`.\n4. Final message names archive path… output={"filePath":"/home/etc/claude-code/work/beehive-kfi/.claude/worktrees/knowledge-graph-tooling/.claude/skills/knowledge-graph/SKILL.md","oldString":"1. Read `commit_hash` from existing baseline → `$OLD`.\n2. `cp \"$ROOT/knowledge-graph.yaml\" \"$ROOT/knowledge-graph.poc.$OLD.yaml\"` — archival is **mandatory and first**. If copy fails, halt; never rebuild over un-archived baseline.\n3. Run `FULL` scan, overwrite `$ROOT/knowledge-graph.yaml`.\n4. Final message names archive path."…